| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H3g01550 | 3:21,662,840-21,663,194 | - | C2H3g02928 | CX3g027262 | LOC_Os03g41060 | Os03g0607200 | - | Detail |
| C1H3g28561 | 3:21,669,111-21,672,616 | - | C2H3g22608 | CX3g025127 | LOC_Os03g41070 | Os03g0607400 | - | Detail |
| C1H3g18716 | 3:21,674,098-21,679,748 | + | C2H3g05599 | CX3g026140 | LOC_Os03g41080 | Os03g0607500 | - | Detail |
| C1H3g08205 | 3:21,680,807-21,681,585 | + | C2H3g06432 | CX3g026140 | - | - | - | Detail |
| C1H3g26017 | 3:21,683,002-21,685,069 | + | - | CX3g028330 | - | - | - | Detail |
| C1H3g15026 | 3:21,685,553-21,700,570 | + | C2H3g05599 | CX3g026140 | LOC_Os03g41080 | Os03g0607500 | - | Detail |
| C1H3g16629 | 3:21,700,992-21,701,954 | - | C2H3g23306 | CX3g027100 | - | Os03g0653900 | - | Detail |
| C1H3g06149 | 3:21,796,830-21,798,255 | + | - | CX3g030299 | - | - | - | Detail |
| C1H3g12752 | 3:21,798,647-21,799,393 | + | - | - | - | - | - | Detail |
| C1H3g12335 | 3:21,846,333-21,848,146 | + | C2H3g26370 | CX3g029102 | LOC_Os03g41100 | Os03g0607600 | - | Detail |
| C1H3g10600 | 3:21,857,707-21,860,115 | - | C2H3g00849 | CX3g025971 | - | Os03g0607800 | - | Detail |
| C1H3g09655 | 3:21,871,246-21,873,339 | - | C2H3g29100 | - | LOC_Os03g41229 | Os03g0608800 | - | Detail |
| C1H3g05887 | 3:21,884,996-21,887,935 | - | C2H3g01566 | - | LOC_Os03g41229 | Os03g0608800 | - | Detail |
| C1H3g07250 | 3:21,895,678-21,898,236 | + | C2H3g30635 | CX3g029637 | LOC_Os03g41290 | Os03g0609200 | - | Detail |
| C1H3g01434 | 3:21,921,972-21,923,114 | + | C2H3g28367 | CX3g031263 | LOC_Os03g41300 | Os03g0609200 | - | Detail |
| C1H3g20844 | 3:21,927,126-21,929,149 | - | C2H3g17106 | CX3g029907 | LOC_Os03g41330 | Os03g0609500 | OsLBD38 | Detail |
| C1H3g05208 | 3:21,937,523-21,943,478 | - | C2H3g05822 | CX3g029419 | LOC_Os03g41350 | Os03g0609800 | - | Detail |
| C1H3g07399 | 3:21,999,168-22,001,974 | + | C2H3g01072 | CX3g027594 | LOC_Os03g41419 | Os03g0610650 | OsSRP-LRS, OsSPN | Detail |
| C1H3g00375 | 3:22,003,293-22,006,170 | + | C2H3g27553 | CX3g025656 | LOC_Os03g41419 | Os03g0610700 | - | Detail |
| C1H3g27992 | 3:22,008,952-22,015,875 | + | C2H3g00176 | CX3g025656 | LOC_Os03g41419 | Os03g0610800 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g003778 | 1:28,332,108-28,332,320 | - | - | - | - | - | - | Detail |
| CX1g005575 | 1:28,333,146-28,335,655 | - | C1H1g10544 | C2H1g26286 | LOC_Os01g55120 | Os01g0756000 | - | Detail |
| CX1g006243 | 1:28,343,333-28,345,424 | + | C1H1g21888 | C2H1g27103 | LOC_Os01g55150 | Os01g0756200 | - | Detail |
| CX1g001072 | 1:28,347,614-28,348,162 | - | - | - | LOC_Os01g55160 | Os01g0756300 | - | Detail |
| CX1g003911 | 1:28,353,190-28,363,008 | - | C1H1g02918 | C2H1g30168 | LOC_Os01g55170 | Os01g0756400 | - | Detail |
| CX1g003221 | 1:28,368,555-28,372,068 | + | C1H1g08295 | C2H1g05126 | LOC_Os01g55190 | Os01g0531400 | - | Detail |
| CX1g002081 | 1:28,381,875-28,384,168 | + | C1H1g21813 | C2H1g22597 | LOC_Os01g55200 | Os01g0756700 | KAT1, OsKAT1 | Detail |
| CX1g004631 | 1:28,387,270-28,387,656 | + | - | - | - | Os01g0756900 | - | Detail |
| CX1g004140 | 1:28,402,436-28,404,204 | + | C1H1g15032 | C2H1g23299 | LOC_Os01g55240 | Os01g0757200 | GA2OX3, OsGA2ox3, ga2ox 3, OsGA2ox-3, GA2ox3, GA2ox-3 | Detail |
| CX1g001582 | 1:28,406,011-28,406,184 | + | - | - | - | - | - | Detail |
| CX1g001542 | 1:28,418,785-28,422,523 | + | C1H1g13228 | C2H1g18562 | LOC_Os01g55260 | Os01g0757400 | - | Detail |
| CX1g000631 | 1:28,423,175-28,425,965 | - | C1H1g20677 | C2H1g15915 | LOC_Os01g55270 | Os01g0757500 | - | Detail |
| CX1g004257 | 1:28,432,705-28,434,020 | - | C1H1g01435 | C2H1g24400 | LOC_Os01g55280 | Os01g0757600 | - | Detail |
| CX1g006495 | 1:28,442,928-28,446,633 | - | C1H1g01756 | C2H1g24899 | LOC_Os01g55290 | Os01g0757700 | - | Detail |
| CX1g003762 | 1:28,446,795-28,451,730 | + | C1H1g09106 | C2H1g22215 | LOC_Os01g55300 | Os01g0757800 | - | Detail |
| CX1g005426 | 1:28,452,490-28,455,625 | - | C1H1g06019 | C2H1g22679 | LOC_Os01g55310 | Os01g0757900 | - | Detail |
| CX1g002989 | 1:28,456,897-28,457,573 | - | C1H1g04207 | C2H1g13025 | LOC_Os01g55320 | Os01g0758000 | - | Detail |
| CX1g000088 | 1:28,458,537-28,458,692 | + | - | - | LOC_Os01g54280 | Os01g0930300 | - | Detail |
| CX1g007259 | 1:28,469,629-28,469,868 | - | - | - | - | - | - | Detail |
| CX1g006023 | 1:28,476,102-28,481,422 | - | C1H1g13262 | C2H1g30086 | LOC_Os01g55350 | Os01g0758300 | - | Detail |