| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H11g12913 | 11:13,132,191-13,135,065 | - | C2H11g16214 | CX11g012957 | LOC_Os11g25700 | Os11g0443700 | - | Detail |
| C1H11g04749 | 11:13,167,508-13,168,530 | + | C2H11g07005 | CX11g011904 | LOC_Os11g25780 | Os11g0444700 | - | Detail |
| C1H11g19485 | 11:13,187,596-13,188,369 | + | C2H11g06487 | CX11g013403 | LOC_Os11g25780 | Os11g0444700 | - | Detail |
| C1H11g28391 | 11:13,196,228-13,199,091 | - | C2H11g02987 | - | - | - | - | Detail |
| C1H11g31601 | 11:13,207,168-13,207,573 | + | C2H11g27394 | - | - | - | - | Detail |
| C1H11g10558 | 11:13,244,867-13,248,930 | + | C2H11g29847 | CX11g011625 | LOC_Os11g25920 | Os11g0446000 | RSS3 | Detail |
| C1H11g07790 | 11:13,268,689-13,288,589 | + | C2H11g23151 | CX11g013991 | LOC_Os11g25980 | Os11g0446500 | - | Detail |
| C1H11g09251 | 11:13,342,013-13,346,021 | - | C2H11g07636 | CX11g013291 | - | - | - | Detail |
| C1H11g30298 | 11:13,347,066-13,347,524 | + | C2H11g29907 | - | - | - | - | Detail |
| C1H11g14144 | 11:13,352,186-13,359,233 | + | C2H11g20908 | CX11g012501 | LOC_Os11g26030 | Os11g0447300 | - | Detail |
| C1H11g04234 | 11:13,390,910-13,398,562 | + | C2H11g17659 | CX11g012981 | LOC_Os11g26130 | Os11g0448000 | OsWSS1 | Detail |
| C1H11g13717 | 11:13,401,164-13,403,931 | + | C2H11g03937 | CX11g012888 | LOC_Os11g26140 | Os11g0448200 | ARK1 | Detail |
| C1H11g04240 | 11:13,404,898-13,409,728 | + | C2H11g29204 | CX11g013778 | LOC_Os11g26160 | Os11g0448400 | - | Detail |
| C1H11g26780 | 11:13,504,421-13,505,054 | - | C2H11g08345 | CX11g014676 | LOC_Os11g26390 | Os11g0450400 | - | Detail |
| C1H11g29112 | 11:13,512,137-13,513,124 | + | C2H11g06228 | CX11g013361 | - | - | - | Detail |
| C1H11g11929 | 11:13,586,862-13,587,945 | - | C2H11g13143 | CX11g011978 | LOC_Os11g26570 | Os11g0451700 | - | Detail |
| C1H11g00705 | 11:13,602,761-13,604,055 | - | C2H11g19619 | - | - | - | - | Detail |
| C1H11g18633 | 11:13,605,477-13,605,977 | - | C2H11g06074 | - | - | - | - | Detail |
| C1H11g03837 | 11:13,632,711-13,633,102 | - | C2H11g04557 | - | LOC_Os11g26710 | Os11g0453550 | - | Detail |
| C1H11g13755 | 11:13,656,258-13,658,923 | - | C2H11g11432 | - | LOC_Os11g26730 | - | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g003778 | 1:28,332,108-28,332,320 | - | - | - | - | - | - | Detail |
| CX1g005575 | 1:28,333,146-28,335,655 | - | C1H1g10544 | C2H1g26286 | LOC_Os01g55120 | Os01g0756000 | - | Detail |
| CX1g006243 | 1:28,343,333-28,345,424 | + | C1H1g21888 | C2H1g27103 | LOC_Os01g55150 | Os01g0756200 | - | Detail |
| CX1g001072 | 1:28,347,614-28,348,162 | - | - | - | LOC_Os01g55160 | Os01g0756300 | - | Detail |
| CX1g003911 | 1:28,353,190-28,363,008 | - | C1H1g02918 | C2H1g30168 | LOC_Os01g55170 | Os01g0756400 | - | Detail |
| CX1g003221 | 1:28,368,555-28,372,068 | + | C1H1g08295 | C2H1g05126 | LOC_Os01g55190 | Os01g0531400 | - | Detail |
| CX1g002081 | 1:28,381,875-28,384,168 | + | C1H1g21813 | C2H1g22597 | LOC_Os01g55200 | Os01g0756700 | KAT1, OsKAT1 | Detail |
| CX1g004631 | 1:28,387,270-28,387,656 | + | - | - | - | Os01g0756900 | - | Detail |
| CX1g004140 | 1:28,402,436-28,404,204 | + | C1H1g15032 | C2H1g23299 | LOC_Os01g55240 | Os01g0757200 | GA2OX3, OsGA2ox3, ga2ox 3, OsGA2ox-3, GA2ox3, GA2ox-3 | Detail |
| CX1g001582 | 1:28,406,011-28,406,184 | + | - | - | - | - | - | Detail |
| CX1g001542 | 1:28,418,785-28,422,523 | + | C1H1g13228 | C2H1g18562 | LOC_Os01g55260 | Os01g0757400 | - | Detail |
| CX1g000631 | 1:28,423,175-28,425,965 | - | C1H1g20677 | C2H1g15915 | LOC_Os01g55270 | Os01g0757500 | - | Detail |
| CX1g004257 | 1:28,432,705-28,434,020 | - | C1H1g01435 | C2H1g24400 | LOC_Os01g55280 | Os01g0757600 | - | Detail |
| CX1g006495 | 1:28,442,928-28,446,633 | - | C1H1g01756 | C2H1g24899 | LOC_Os01g55290 | Os01g0757700 | - | Detail |
| CX1g003762 | 1:28,446,795-28,451,730 | + | C1H1g09106 | C2H1g22215 | LOC_Os01g55300 | Os01g0757800 | - | Detail |
| CX1g005426 | 1:28,452,490-28,455,625 | - | C1H1g06019 | C2H1g22679 | LOC_Os01g55310 | Os01g0757900 | - | Detail |
| CX1g002989 | 1:28,456,897-28,457,573 | - | C1H1g04207 | C2H1g13025 | LOC_Os01g55320 | Os01g0758000 | - | Detail |
| CX1g000088 | 1:28,458,537-28,458,692 | + | - | - | LOC_Os01g54280 | Os01g0930300 | - | Detail |
| CX1g007259 | 1:28,469,629-28,469,868 | - | - | - | - | - | - | Detail |
| CX1g006023 | 1:28,476,102-28,481,422 | - | C1H1g13262 | C2H1g30086 | LOC_Os01g55350 | Os01g0758300 | - | Detail |