| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H1g02341 | 1:19,552-27,397 | + | C2H1g13015 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C1H1g23301 | 1:34,909-38,077 | + | C2H1g25732 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C1H1g05541 | 1:38,658-42,693 | + | C2H1g24136 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C1H1g18141 | 1:45,137-49,100 | + | C2H1g01770 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C1H1g06702 | 1:49,316-50,669 | + | C2H1g21686 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C1H1g15122 | 1:53,886-58,091 | + | C2H1g03140 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C1H1g26676 | 1:58,983-64,706 | + | C2H1g12741 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C1H1g29605 | 1:68,013-72,703 | + | C2H1g30020 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C1H1g15874 | 1:72,685-75,717 | - | C2H1g01369 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C1H1g31238 | 1:79,440-86,394 | + | C2H1g16597 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C1H1g30351 | 1:88,972-90,382 | + | C2H1g26722 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C1H1g07147 | 1:93,453-96,885 | + | C2H1g16862 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C1H1g23624 | 1:103,904-104,966 | + | C2H1g21224 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C1H1g19237 | 1:106,332-109,626 | + | C2H1g12981 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C1H1g02228 | 1:110,056-112,714 | + | C2H1g13148 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C1H1g19000 | 1:113,782-115,921 | + | C2H1g25133 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| C1H1g20467 | 1:116,248-118,728 | + | C2H1g01047 | CX1g001371 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| C1H1g21121 | 1:119,474-124,658 | + | C2H1g05282 | CX1g006904 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| C1H1g31375 | 1:129,470-130,340 | - | C2H1g27348 | CX1g001497 | LOC_Os01g01340 | Os01g0102900 | LIR1, Lir1 | Detail |
| C1H1g31418 | 1:131,158-133,161 | - | C2H1g25360 | CX1g000859 | LOC_Os01g01350 | Os01g0103000 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H9g22972 | 9:319,742-324,687 | + | C1H9g01741 | CX9g057297 | LOC_Os09g01600 | Os09g0103200 | - | Detail |
| C2H9g16676 | 9:328,751-329,740 | - | - | CX9g056224 | LOC_Os09g01610 | Os09g0103400 | - | Detail |
| C2H9g07969 | 9:332,866-338,494 | + | C1H9g12264 | CX9g055170 | LOC_Os09g01620 | Os09g0103500 | - | Detail |
| C2H9g23774 | 9:340,939-347,729 | - | C1H9g24389 | CX9g055607 | LOC_Os09g01630 | Os09g0103600 | - | Detail |
| C2H9g29883 | 9:352,438-353,571 | + | - | CX9g057259 | LOC_Os09g01640 | Os09g0103700 | - | Detail |
| C2H9g16389 | 9:376,815-377,173 | - | C1H9g20260 | CX9g057224 | - | - | - | Detail |
| C2H9g22729 | 9:378,725-385,026 | + | C1H9g06955 | CX9g055907 | LOC_Os09g01650 | Os09g0103800 | - | Detail |
| C2H9g16634 | 9:406,184-412,350 | - | C1H9g22354 | CX9g057376 | LOC_Os09g01680 | Os09g0104200 | RAD51D, OsRAD51D.3, OsRAD51D, OsRad51D | Detail |
| C2H9g14701 | 9:412,420-415,177 | + | C1H9g21586 | - | LOC_Os09g01690 | Os09g0104300 | - | Detail |
| C2H9g10538 | 9:416,660-419,290 | - | - | CX9g056747 | LOC_Os09g01700 | Os09g0104700 | - | Detail |
| C2H9g17453 | 9:446,949-450,853 | - | C1H9g13033 | CX9g054917 | LOC_Os09g01790 | - | - | Detail |
| C2H9g11873 | 9:488,506-491,881 | + | C1H9g15386 | CX9g056345 | - | - | - | Detail |
| C2H9g07049 | 9:540,701-541,678 | - | - | CX9g057727 | LOC_Os09g01960 | Os09g0106700 | - | Detail |
| C2H9g27759 | 9:579,666-579,827 | - | - | CX9g056249 | LOC_Os09g02000 | Os09g0107400 | - | Detail |
| C2H9g16224 | 9:604,424-611,143 | + | C1H9g28229 | CX9g056897 | LOC_Os09g02130 | Os09g0108400 | - | Detail |
| C2H9g00527 | 9:621,532-627,797 | + | C1H9g14656 | CX9g058002 | LOC_Os09g02140 | Os09g0108600 | - | Detail |
| C2H9g13991 | 9:630,539-631,420 | - | - | - | - | - | - | Detail |
| C2H9g03100 | 9:654,975-655,436 | + | - | CX9g056432 | LOC_Os09g02150 | - | - | Detail |
| C2H9g06082 | 9:665,702-671,407 | - | C1H9g00172 | CX9g056152 | LOC_Os09g02170 | Os09g0109500 | - | Detail |
| C2H9g24122 | 9:673,188-673,482 | + | C1H9g18224 | - | LOC_Os09g02180 | Os09g0109600 | OsDSSR1 | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g006340 | 1:28,200,881-28,202,526 | + | C1H1g16292 | C2H1g20006 | LOC_Os01g54969 | Os01g0753300 | OsASMT1 | Detail |
| CX1g002732 | 1:28,203,384-28,208,549 | - | C1H1g07442 | C2H1g09497 | LOC_Os01g54990 | Os01g0753500 | OsARF3lb | Detail |
| CX1g004375 | 1:28,212,224-28,212,864 | + | C1H1g05271 | C2H1g13016 | LOC_Os01g49830 | Os01g0693400 | OsRAV11 | Detail |
| CX1g002229 | 1:28,215,733-28,216,728 | - | - | - | - | - | - | Detail |
| CX1g001674 | 1:28,219,184-28,219,336 | - | - | - | LOC_Os01g49630 | Os01g0728000 | - | Detail |
| CX1g006658 | 1:28,221,260-28,221,826 | + | C1H1g02806 | C2H1g17359 | LOC_Os01g55020 | Os01g0754000 | - | Detail |
| CX1g002933 | 1:28,224,707-28,226,154 | - | C1H1g16947 | C2H1g07609 | LOC_Os01g55030 | Os01g0754100 | - | Detail |
| CX1g005591 | 1:28,229,137-28,231,860 | - | C1H1g05578 | C2H1g07292 | LOC_Os01g55040 | Os01g0754200 | - | Detail |
| CX1g002987 | 1:28,234,124-28,234,579 | + | - | - | - | Os01g0754300 | - | Detail |
| CX1g006946 | 1:28,237,641-28,242,144 | - | C1H1g11544 | C2H1g26542 | LOC_Os01g55050 | Os01g0754500 | - | Detail |
| CX1g004117 | 1:28,247,413-28,249,404 | - | C1H1g02777 | C2H1g02122 | LOC_Os01g55070 | Os01g0754700 | - | Detail |
| CX1g001941 | 1:28,261,878-28,262,171 | - | - | - | LOC_Os01g55080 | Os01g0754800 | - | Detail |
| CX1g002369 | 1:28,262,879-28,263,586 | + | C1H1g16919 | C2H1g22289 | - | - | - | Detail |
| CX1g003382 | 1:28,267,536-28,268,952 | - | C1H3g14582 | C2H4g11700 | - | Os02g0324200 | - | Detail |
| CX1g006404 | 1:28,276,388-28,281,670 | - | C1H1g27304 | C2H1g25651 | LOC_Os01g55094 | Os01g0755100 | - | Detail |
| CX1g000336 | 1:28,291,275-28,292,621 | + | C1H1g29987 | C2H1g07282 | LOC_Os01g55100 | Os01g0755500 | OsPCF7, PCF7 | Detail |
| CX1g001257 | 1:28,318,453-28,320,081 | + | C1H1g04145 | C2H1g15782 | LOC_Os01g55090 | Os01g0595300 | - | Detail |
| CX1g001076 | 1:28,322,096-28,322,797 | + | C1H1g19774 | C2H1g08171 | LOC_Os01g55110 | Os01g0755700 | NBIP1 | Detail |
| CX1g001382 | 1:28,328,637-28,329,422 | + | C1H3g22084 | - | - | - | - | Detail |
| CX1g001166 | 1:28,329,732-28,330,082 | + | - | - | - | - | - | Detail |