| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H5g15273 | 5:3,831,454-3,832,605 | - | C2H5g24682 | CX5g040319 | LOC_Os05g08540 | Os05g0178100 | GA3OX1, OsGA3ox1, GA3ox1, OsGA3OX1 | Detail |
| C1H5g24081 | 5:3,834,404-3,835,475 | - | C2H5g23593 | CX5g038579 | LOC_Os05g08550 | - | - | Detail |
| C1H5g18416 | 5:3,836,538-3,838,831 | - | C2H5g22086 | - | - | Os05g0178300 | - | Detail |
| C1H5g28500 | 5:3,840,108-3,843,426 | - | C2H5g19576 | CX5g037936 | LOC_Os05g08560 | Os05g0178400 | - | Detail |
| C1H5g30909 | 5:3,849,015-3,851,278 | - | C2H5g23931 | CX5g039091 | LOC_Os05g08570 | Os05g0178600 | - | Detail |
| C1H5g11220 | 5:3,851,313-3,851,564 | - | C2H5g20930 | CX5g038646 | - | Os05g0178600 | - | Detail |
| C1H5g28275 | 5:3,874,896-3,878,806 | + | C2H5g20358 | CX5g038400 | LOC_Os05g08600 | Os05g0178900 | - | Detail |
| C1H5g03795 | 5:3,881,317-3,885,675 | + | C2H5g18108 | CX5g039771 | LOC_Os05g08610 | Os05g0179000 | - | Detail |
| C1H5g15516 | 5:3,896,992-3,897,444 | + | C2H5g28488 | - | LOC_Os08g23900 | - | - | Detail |
| C1H5g19959 | 5:3,919,187-3,921,168 | - | C2H5g17102 | CX5g037983 | LOC_Os05g08640 | Os05g0179300 | - | Detail |
| C1H5g21520 | 5:3,945,129-3,948,203 | + | C2H5g23753 | CX5g039721 | LOC_Os05g08730 | Os05g0179800 | - | Detail |
| C1H5g27830 | 5:3,989,851-3,993,349 | - | C2H5g25802 | CX5g038350 | LOC_Os05g08790 | Os05g0180400 | - | Detail |
| C1H5g02747 | 5:3,994,282-3,997,197 | - | C2H5g06685 | CX5g037875 | LOC_Os05g08800 | Os05g0180500 | - | Detail |
| C1H5g20076 | 5:4,011,392-4,022,845 | - | C2H5g05984 | CX5g036876 | LOC_Os05g08810 | Os05g0180600 | - | Detail |
| C1H5g03323 | 5:4,025,285-4,026,384 | + | C2H5g03050 | CX5g037205 | LOC_Os05g08820 | Os05g0180700 | - | Detail |
| C1H5g21276 | 5:4,036,621-4,042,595 | + | C2H5g11956 | CX5g037851 | LOC_Os05g08840 | Os05g0181000 | - | Detail |
| C1H5g29149 | 5:4,046,721-4,047,724 | - | C2H5g06572 | CX5g037202 | LOC_Os05g08854 | Os05g0181250 | - | Detail |
| C1H5g20825 | 5:4,075,430-4,079,590 | - | C2H5g07455 | CX10g010048 | - | - | - | Detail |
| C1H5g24930 | 5:4,088,887-4,091,504 | - | C2H5g23526 | CX5g038397 | LOC_Os05g08930 | Os05g0182100 | - | Detail |
| C1H5g10054 | 5:4,093,343-4,097,173 | - | C2H5g19515 | CX5g038109 | LOC_Os05g08950 | Os05g0182201 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g006340 | 1:28,200,881-28,202,526 | + | C1H1g16292 | C2H1g20006 | LOC_Os01g54969 | Os01g0753300 | OsASMT1 | Detail |
| CX1g002732 | 1:28,203,384-28,208,549 | - | C1H1g07442 | C2H1g09497 | LOC_Os01g54990 | Os01g0753500 | OsARF3lb | Detail |
| CX1g004375 | 1:28,212,224-28,212,864 | + | C1H1g05271 | C2H1g13016 | LOC_Os01g49830 | Os01g0693400 | OsRAV11 | Detail |
| CX1g002229 | 1:28,215,733-28,216,728 | - | - | - | - | - | - | Detail |
| CX1g001674 | 1:28,219,184-28,219,336 | - | - | - | LOC_Os01g49630 | Os01g0728000 | - | Detail |
| CX1g006658 | 1:28,221,260-28,221,826 | + | C1H1g02806 | C2H1g17359 | LOC_Os01g55020 | Os01g0754000 | - | Detail |
| CX1g002933 | 1:28,224,707-28,226,154 | - | C1H1g16947 | C2H1g07609 | LOC_Os01g55030 | Os01g0754100 | - | Detail |
| CX1g005591 | 1:28,229,137-28,231,860 | - | C1H1g05578 | C2H1g07292 | LOC_Os01g55040 | Os01g0754200 | - | Detail |
| CX1g002987 | 1:28,234,124-28,234,579 | + | - | - | - | Os01g0754300 | - | Detail |
| CX1g006946 | 1:28,237,641-28,242,144 | - | C1H1g11544 | C2H1g26542 | LOC_Os01g55050 | Os01g0754500 | - | Detail |
| CX1g004117 | 1:28,247,413-28,249,404 | - | C1H1g02777 | C2H1g02122 | LOC_Os01g55070 | Os01g0754700 | - | Detail |
| CX1g001941 | 1:28,261,878-28,262,171 | - | - | - | LOC_Os01g55080 | Os01g0754800 | - | Detail |
| CX1g002369 | 1:28,262,879-28,263,586 | + | C1H1g16919 | C2H1g22289 | - | - | - | Detail |
| CX1g003382 | 1:28,267,536-28,268,952 | - | C1H3g14582 | C2H4g11700 | - | Os02g0324200 | - | Detail |
| CX1g006404 | 1:28,276,388-28,281,670 | - | C1H1g27304 | C2H1g25651 | LOC_Os01g55094 | Os01g0755100 | - | Detail |
| CX1g000336 | 1:28,291,275-28,292,621 | + | C1H1g29987 | C2H1g07282 | LOC_Os01g55100 | Os01g0755500 | OsPCF7, PCF7 | Detail |
| CX1g001257 | 1:28,318,453-28,320,081 | + | C1H1g04145 | C2H1g15782 | LOC_Os01g55090 | Os01g0595300 | - | Detail |
| CX1g001076 | 1:28,322,096-28,322,797 | + | C1H1g19774 | C2H1g08171 | LOC_Os01g55110 | Os01g0755700 | NBIP1 | Detail |
| CX1g001382 | 1:28,328,637-28,329,422 | + | C1H3g22084 | - | - | - | - | Detail |
| CX1g001166 | 1:28,329,732-28,330,082 | + | - | - | - | - | - | Detail |