| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H4g15848 | 4:27,158,459-27,163,047 | + | C2H4g15420 | CX4g034962 | LOC_Os04g52540 | Os04g0615700 | OsAGO2 | Detail |
| C1H4g23171 | 4:27,164,139-27,169,123 | + | C2H4g00576 | CX4g031812 | LOC_Os04g52550 | Os04g0615800 | - | Detail |
| C1H4g27864 | 4:27,169,421-27,173,804 | - | C2H4g30305 | CX4g035991 | LOC_Os04g52560 | Os04g0615900 | - | Detail |
| C1H4g17112 | 4:27,175,105-27,177,508 | - | C2H4g08342 | CX4g032086 | LOC_Os04g52570 | Os04g0616000 | - | Detail |
| C1H4g26505 | 4:27,179,338-27,181,369 | - | C2H4g00410 | CX4g034073 | LOC_Os04g52580 | Os04g0616100 | - | Detail |
| C1H4g26370 | 4:27,182,695-27,184,868 | - | C2H4g07040 | CX4g035196 | LOC_Os04g52590 | Os04g0616200 | - | Detail |
| C1H4g21072 | 4:27,189,513-27,190,146 | - | C2H4g12282 | - | LOC_Os04g52590 | Os04g0616200 | - | Detail |
| C1H4g31488 | 4:27,192,850-27,201,167 | - | C2H4g22401 | CX4g035196 | LOC_Os04g52600 | Os04g0616300 | - | Detail |
| C1H4g29940 | 4:27,202,864-27,215,899 | - | C2H4g26176 | CX4g035196 | LOC_Os04g52600 | Os04g0616500 | - | Detail |
| C1H4g23482 | 4:27,215,988-27,219,096 | - | C2H4g26176 | - | LOC_Os04g52614 | Os04g0616400 | - | Detail |
| C1H4g10791 | 4:27,223,436-27,231,152 | - | C2H4g28668 | CX4g035196 | LOC_Os04g52630 | Os04g0616600 | - | Detail |
| C1H4g16122 | 4:27,232,733-27,243,770 | - | C2H4g22401 | CX4g035196 | LOC_Os04g52640 | Os04g0616600 | - | Detail |
| C1H4g24234 | 4:27,243,814-27,251,346 | - | C2H4g09870 | - | LOC_Os04g52630 | Os04g0616700 | - | Detail |
| C1H4g02426 | 4:27,255,578-27,256,798 | + | - | - | LOC_Os04g43810 | - | - | Detail |
| C1H4g02647 | 4:27,259,974-27,262,783 | - | C2H4g22401 | CX4g035196 | LOC_Os04g52600 | Os04g0616300 | - | Detail |
| C1H4g02369 | 4:27,273,428-27,277,497 | - | C2H4g12282 | CX4g035971 | LOC_Os04g52630 | Os04g0616700 | - | Detail |
| C1H4g28831 | 4:27,283,981-27,285,847 | + | C2H4g04032 | - | LOC_Os04g52650 | Os04g0616800 | - | Detail |
| C1H4g27365 | 4:27,305,710-27,311,051 | - | C2H4g01536 | CX4g036466 | LOC_Os04g52690 | Os04g0617600 | - | Detail |
| C1H4g15358 | 4:27,321,635-27,322,707 | - | C2H4g04231 | CX4g034356 | LOC_Os04g52700 | Os04g0617700 | - | Detail |
| C1H4g09661 | 4:27,331,354-27,335,112 | + | C2H4g26522 | CX4g031958 | LOC_Os04g52710 | Os04g0617800 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX8g051736 | 8:4,508,773-4,510,425 | + | C1H8g17867 | C2H8g30290 | LOC_Os08g09340 | Os08g0192800 | - | Detail |
| CX8g050572 | 8:4,512,696-4,516,856 | - | C1H8g06439 | C2H8g22719 | LOC_Os08g09350 | Os08g0192900 | - | Detail |
| CX8g053323 | 8:4,526,782-4,528,401 | - | - | - | LOC_Os08g09360 | Os08g0193000 | - | Detail |
| CX8g054398 | 8:4,530,479-4,534,536 | + | C1H8g20802 | C2H8g26778 | LOC_Os08g09370 | Os08g0193100 | OsSPS4 | Detail |
| CX8g050681 | 8:4,551,428-4,554,201 | + | C1H8g16197 | C2H8g03394 | LOC_Os08g09450 | Os08g0193900 | - | Detail |
| CX8g053997 | 8:4,557,421-4,560,357 | - | C1H8g29041 | C2H8g17617 | LOC_Os08g09430 | Os08g0193700 | - | Detail |
| CX8g052446 | 8:4,622,865-4,624,965 | + | C1H8g21908 | C2H8g26516 | LOC_Os08g09570 | Os08g0194900 | - | Detail |
| CX8g054397 | 8:4,628,208-4,628,375 | + | - | - | - | - | - | Detail |
| CX8g054585 | 8:4,629,574-4,632,252 | + | C1H8g14744 | C2H8g12506 | LOC_Os08g09590 | Os08g0195000 | - | Detail |
| CX8g053492 | 8:4,637,502-4,638,470 | + | C1H8g05844 | C2H8g08097 | LOC_Os08g09600 | Os08g0191300 | - | Detail |
| CX8g054571 | 8:4,696,033-4,697,866 | + | C1H8g12615 | C2H8g18046 | LOC_Os08g09690 | Os08g0196700 | HAP2A, OsHAP2A, NF-YA, CBF-B, NF-YA7, OsNF-YA7 | Detail |
| CX8g051043 | 8:4,708,042-4,719,113 | + | C1H8g01088 | C2H8g03656 | LOC_Os08g09710 | Os08g0197050 | - | Detail |
| CX8g053857 | 8:4,749,226-4,751,226 | - | C1H8g30255 | C2H5g26795 | LOC_Os08g09770 | Os08g0197700 | OsBiP5 | Detail |
| CX8g054342 | 8:4,764,482-4,769,873 | - | C1H8g26667 | C2H8g22386 | LOC_Os08g09800 | Os08g0198000 | - | Detail |
| CX8g054732 | 8:4,776,494-4,779,242 | + | - | - | - | - | - | Detail |
| CX8g051609 | 8:4,787,144-4,796,536 | - | C1H8g26667 | C2H8g22386 | LOC_Os08g09810 | Os08g0198000 | - | Detail |
| CX8g053051 | 8:4,812,148-4,813,179 | + | C1H8g23392 | C2H8g25311 | LOC_Os08g09830 | Os08g0198300 | - | Detail |
| CX8g053236 | 8:4,824,670-4,828,178 | - | C1H8g11892 | C2H8g01543 | LOC_Os08g09900 | Os08g0198000 | - | Detail |
| CX8g054818 | 8:4,829,087-4,829,350 | - | C1H8g11892 | - | - | Os08g0198900 | - | Detail |
| CX8g051012 | 8:4,830,681-4,839,154 | + | C1H8g14317 | C2H8g15525 | LOC_Os08g09910 | Os08g0199000 | - | Detail |