| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H3g25691 | 3:9,462,289-9,465,500 | + | C2H3g16033 | CX3g029358 | LOC_Os03g19020 | Os03g0302200 | OsHIRP1 | Detail |
| C1H3g01186 | 3:9,471,237-9,472,085 | + | C2H3g22160 | CX3g025355 | LOC_Os03g19040 | Os03g0302500 | - | Detail |
| C1H3g04602 | 3:9,474,864-9,477,250 | + | C2H3g04749 | CX3g031208 | LOC_Os03g19059 | Os03g0302700 | - | Detail |
| C1H3g22154 | 3:9,479,142-9,479,789 | + | C2H3g01569 | CX3g027498 | LOC_Os03g19070 | Os03g0302800 | - | Detail |
| C1H3g20481 | 3:9,493,622-9,498,114 | + | C2H3g02069 | CX3g029770 | LOC_Os03g19080 | Os03g0302900 | SSD1 | Detail |
| C1H3g20097 | 3:9,501,969-9,503,042 | + | C2H3g07365 | CX3g030525 | LOC_Os03g19090 | Os03g0303100 | - | Detail |
| C1H3g25874 | 3:9,511,342-9,517,834 | - | C2H3g09593 | CX3g027281 | LOC_Os03g19120 | Os03g0303500 | OsP1 | Detail |
| C1H3g30781 | 3:9,538,145-9,538,965 | - | C2H3g00606 | CX3g028949 | LOC_Os03g19170 | Os03g0304100 | - | Detail |
| C1H3g08647 | 3:9,542,012-9,549,190 | + | C2H3g12534 | CX3g027589 | LOC_Os03g19190 | Os03g0304400 | - | Detail |
| C1H3g21470 | 3:9,562,466-9,565,948 | - | C2H3g09070 | CX3g026232 | LOC_Os03g19200 | Os03g0304500 | - | Detail |
| C1H3g06043 | 3:9,588,138-9,590,992 | - | C2H3g20134 | - | LOC_Os03g19220 | Os03g0304800 | - | Detail |
| C1H3g10550 | 3:9,600,828-9,604,939 | - | C2H3g11777 | CX3g026365 | LOC_Os03g19240 | Os03g0305000 | - | Detail |
| C1H3g05747 | 3:9,607,422-9,611,029 | - | C2H3g17079 | CX3g028640 | LOC_Os03g19250 | Os03g0305100 | - | Detail |
| C1H3g00125 | 3:9,615,615-9,616,253 | - | C2H3g13465 | CX3g029782 | LOC_Os03g19260 | Os03g0305200 | - | Detail |
| C1H3g18796 | 3:9,624,177-9,625,049 | - | C2H3g28502 | CX3g028201 | LOC_Os03g19270 | Os03g0305400 | OsUSP3 | Detail |
| C1H3g22639 | 3:9,627,619-9,632,059 | + | C2H3g12913 | CX3g030535 | LOC_Os03g19280 | Os03g0305500 | ASL1, OsASL1.2, OsASL1, OsAL1, red1 | Detail |
| C1H3g06291 | 3:9,633,050-9,634,190 | + | C2H3g24123 | CX3g026844 | LOC_Os03g19290 | Os03g0305600 | - | Detail |
| C1H3g09918 | 3:9,635,133-9,638,331 | + | C2H3g29234 | CX3g029447 | LOC_Os03g19300 | Os03g0305700 | - | Detail |
| C1H3g15276 | 3:9,638,602-9,640,053 | - | C2H3g25404 | CX3g025751 | LOC_Os03g19310 | Os03g0305800 | - | Detail |
| C1H3g04998 | 3:9,651,450-9,652,799 | + | C2H3g04492 | CX3g029664 | LOC_Os03g19330 | Os03g0306100 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX8g053110 | 8:4,228,269-4,229,168 | + | C1H8g31780 | - | LOC_Os08g08850 | Os08g0187900 | - | Detail |
| CX8g050538 | 8:4,231,447-4,233,621 | - | C1H8g04609 | C2H8g10331 | LOC_Os08g08860 | Os08g0188000 | - | Detail |
| CX8g053351 | 8:4,341,675-4,345,824 | - | C1H8g24041 | C2H8g21178 | LOC_Os08g09100 | Os08g0190200 | - | Detail |
| CX8g053035 | 8:4,347,879-4,352,299 | - | C1H8g29235 | C2H8g23289 | LOC_Os08g09110 | Os08g0190300 | - | Detail |
| CX8g052689 | 8:4,373,146-4,373,307 | - | - | - | - | - | - | Detail |
| CX8g053094 | 8:4,376,330-4,376,635 | - | C1H8g12481 | C2H8g00315 | - | Os08g0112500 | - | Detail |
| CX8g052256 | 8:4,386,605-4,387,108 | + | - | C2H8g16113 | LOC_Os08g09170 | Os08g0190500 | - | Detail |
| CX8g052757 | 8:4,387,973-4,389,755 | + | C1H8g09145 | C2H8g16113 | LOC_Os08g09170 | Os08g0190700 | - | Detail |
| CX8g054211 | 8:4,391,551-4,393,221 | - | C1H8g23743 | C2H8g27218 | LOC_Os08g09180 | Os08g0190800 | - | Detail |
| CX8g054709 | 8:4,395,890-4,397,257 | + | C1H8g04761 | C2H8g07702 | LOC_Os08g09190 | Os08g0191000 | - | Detail |
| CX8g052864 | 8:4,400,049-4,406,863 | - | C1H8g07831 | C2H8g22469 | LOC_Os08g09200 | Os08g0191100 | OsACO2, OsACO1 | Detail |
| CX8g053274 | 8:4,426,736-4,429,925 | + | C1H8g29592 | - | LOC_Os08g09210 | Os08g0191200 | VAL1, GARS | Detail |
| CX8g050571 | 8:4,433,751-4,434,785 | - | C1H8g30550 | C2H8g24964 | LOC_Os08g09220 | Os08g0191300 | - | Detail |
| CX8g053706 | 8:4,441,570-4,452,408 | + | C1H8g21948 | C2H8g19186 | LOC_Os08g09230 | Os08g0191433 | SSIIIa | Detail |
| CX8g050617 | 8:4,455,009-4,456,005 | + | C1H8g08524 | C2H8g11878 | LOC_Os08g09240 | Os08g0191600 | OsATG8c | Detail |
| CX8g050515 | 8:4,463,557-4,466,111 | - | C1H8g00665 | C2H8g14452 | LOC_Os08g09250 | Os08g0191700 | GLYI-11, OsGLYI11.1, OsGLYI11, GLYI11 | Detail |
| CX8g053640 | 8:4,468,922-4,473,671 | - | C1H8g00262 | C2H8g14452 | LOC_Os08g09260 | Os08g0191800 | - | Detail |
| CX8g053519 | 8:4,474,103-4,478,415 | + | C1H8g01175 | C2H8g00960 | LOC_Os08g09270 | Os08g0191900 | CDE4 | Detail |
| CX8g052996 | 8:4,486,428-4,487,886 | + | C1H8g08962 | C2H8g21875 | LOC_Os08g09300 | Os08g0192200 | - | Detail |
| CX8g054452 | 8:4,491,554-4,494,437 | - | C1H8g23476 | C2H8g22310 | LOC_Os08g09320 | Os08g0192400 | - | Detail |