| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H1g02341 | 1:19,552-27,397 | + | C2H1g13015 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C1H1g23301 | 1:34,909-38,077 | + | C2H1g25732 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C1H1g05541 | 1:38,658-42,693 | + | C2H1g24136 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C1H1g18141 | 1:45,137-49,100 | + | C2H1g01770 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C1H1g06702 | 1:49,316-50,669 | + | C2H1g21686 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C1H1g15122 | 1:53,886-58,091 | + | C2H1g03140 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C1H1g26676 | 1:58,983-64,706 | + | C2H1g12741 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C1H1g29605 | 1:68,013-72,703 | + | C2H1g30020 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C1H1g15874 | 1:72,685-75,717 | - | C2H1g01369 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C1H1g31238 | 1:79,440-86,394 | + | C2H1g16597 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C1H1g30351 | 1:88,972-90,382 | + | C2H1g26722 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C1H1g07147 | 1:93,453-96,885 | + | C2H1g16862 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C1H1g23624 | 1:103,904-104,966 | + | C2H1g21224 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C1H1g19237 | 1:106,332-109,626 | + | C2H1g12981 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C1H1g02228 | 1:110,056-112,714 | + | C2H1g13148 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C1H1g19000 | 1:113,782-115,921 | + | C2H1g25133 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| C1H1g20467 | 1:116,248-118,728 | + | C2H1g01047 | CX1g001371 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| C1H1g21121 | 1:119,474-124,658 | + | C2H1g05282 | CX1g006904 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| C1H1g31375 | 1:129,470-130,340 | - | C2H1g27348 | CX1g001497 | LOC_Os01g01340 | Os01g0102900 | LIR1, Lir1 | Detail |
| C1H1g31418 | 1:131,158-133,161 | - | C2H1g25360 | CX1g000859 | LOC_Os01g01350 | Os01g0103000 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H3g09365 | 3:14,022,692-14,029,760 | - | C1H3g05327 | CX3g027782 | LOC_Os03g27510 | Os03g0393700 | - | Detail |
| C2H3g30087 | 3:14,032,064-14,034,436 | - | C1H3g01352 | CX3g026293 | LOC_Os03g32580 | Os03g0211900 | - | Detail |
| C2H3g11623 | 3:14,034,559-14,035,580 | - | C1H3g05517 | CX3g028044 | LOC_Os03g28270 | Os03g0400800 | - | Detail |
| C2H3g10908 | 3:14,044,828-14,047,298 | - | C1H3g19955 | CX3g027788 | LOC_Os03g32580 | Os03g0145102 | - | Detail |
| C2H3g03280 | 3:14,048,897-14,050,147 | + | - | - | - | - | - | Detail |
| C2H3g07142 | 3:14,050,595-14,051,936 | + | - | - | - | - | - | Detail |
| C2H3g17405 | 3:14,057,376-14,058,446 | - | - | - | - | - | - | Detail |
| C2H3g04527 | 3:14,069,232-14,069,991 | - | C1H3g05517 | CX3g028044 | LOC_Os03g28270 | Os03g0400800 | - | Detail |
| C2H3g28189 | 3:14,070,010-14,070,943 | - | C1H3g05517 | CX3g028044 | LOC_Os03g28270 | Os03g0400800 | - | Detail |
| C2H3g21452 | 3:14,083,851-14,085,452 | - | C1H3g17401 | CX3g029574 | - | Os03g0184000 | OsPDS | Detail |
| C2H3g10220 | 3:14,094,321-14,100,635 | - | C1H3g27278 | CX3g031229 | LOC_Os03g28270 | Os03g0400800 | - | Detail |
| C2H3g08253 | 3:14,104,054-14,104,308 | - | - | - | - | - | - | Detail |
| C2H3g06277 | 3:14,167,794-14,171,626 | - | C1H3g13238 | CX3g029516 | LOC_Os03g32580 | Os03g0773700 | - | Detail |
| C2H3g13071 | 3:14,219,645-14,219,983 | - | - | - | LOC_Os02g28210 | - | - | Detail |
| C2H3g00521 | 3:14,231,740-14,241,021 | - | C1H3g28596 | CX3g026827 | LOC_Os03g27550 | Os03g0393300 | - | Detail |
| C2H3g03469 | 3:14,295,554-14,300,370 | - | C1H3g26998 | CX3g027706 | LOC_Os03g27550 | Os03g0393700 | - | Detail |
| C2H3g01147 | 3:14,307,579-14,309,156 | + | C1H3g17152 | CX3g026110 | LOC_Os03g27610 | Os03g0393900 | OsMATL, OspPLAIIφ, OspPLAIIphi, OsPLP1, PLP1, OspPLAIIbeta | Detail |
| C2H3g26978 | 3:14,380,764-14,384,352 | - | C1H3g03234 | CX3g027952 | LOC_Os03g27760 | Os03g0394900 | - | Detail |
| C2H3g09617 | 3:14,398,273-14,401,752 | - | C1H3g11733 | CX3g030447 | LOC_Os03g27770 | Os03g0395000 | - | Detail |
| C2H3g01443 | 3:14,407,064-14,410,216 | + | C1H3g19183 | CX3g028476 | LOC_Os03g27780 | Os03g0395100 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX8g051036 | 8:1,721,350-1,724,354 | - | C1H8g03438 | C2H8g06220 | LOC_Os08g04440 | Os08g0139000 | - | Detail |
| CX8g053718 | 8:1,727,265-1,728,850 | - | C1H8g15641 | C2H8g21692 | LOC_Os08g04450 | Os08g0139100 | OsMORF9 | Detail |
| CX8g050588 | 8:1,732,193-1,733,883 | - | C1H8g18260 | C2H8g21939 | LOC_Os08g04460 | Os08g0139200 | - | Detail |
| CX8g051905 | 8:1,745,916-1,747,010 | - | C1H8g17067 | C2H8g28996 | LOC_Os08g04470 | Os08g0110500 | PUB15, OsPUB15 | Detail |
| CX8g051739 | 8:1,752,466-1,755,745 | + | C1H8g25614 | C2H8g16693 | LOC_Os08g04490 | Os08g0149800 | - | Detail |
| CX8g051580 | 8:1,756,854-1,760,069 | - | C1H8g27402 | C2H8g02379 | LOC_Os08g04500 | Os08g0139700 | OsTPS3 | Detail |
| CX8g052260 | 8:1,765,625-1,765,792 | - | - | - | LOC_Os08g04520 | - | - | Detail |
| CX8g052775 | 8:1,781,320-1,782,864 | + | C1H8g15721 | - | LOC_Os08g04540 | Os08g0140300 | TDC1, OsTDC, TDC2 | Detail |
| CX8g054801 | 8:1,790,756-1,791,232 | - | C1H8g27148 | - | - | - | - | Detail |
| CX8g050533 | 8:1,796,081-1,797,655 | - | C1H8g04426 | - | LOC_Os08g04560 | Os08g0140500 | TDC3 | Detail |
| CX8g051150 | 8:1,808,106-1,809,497 | - | C1H8g15879 | C2H8g06408 | LOC_Os08g04570 | Os08g0140600 | - | Detail |
| CX8g052130 | 8:1,811,644-1,814,202 | - | C1H8g15879 | C2H8g06408 | LOC_Os08g04580 | Os08g0140700 | - | Detail |
| CX8g053331 | 8:1,815,739-1,819,923 | + | C1H8g12038 | C2H8g20133 | LOC_Os08g04590 | Os08g0141000 | - | Detail |
| CX8g050848 | 8:1,825,969-1,826,286 | - | - | - | - | - | - | Detail |
| CX8g050429 | 8:1,826,982-1,827,290 | - | - | - | - | - | - | Detail |
| CX8g051655 | 8:1,828,241-1,830,401 | + | C1H8g02855 | C2H8g05446 | LOC_Os08g04590 | Os08g0140700 | - | Detail |
| CX8g052617 | 8:1,837,179-1,837,370 | - | - | - | - | - | - | Detail |
| CX8g054144 | 8:1,840,539-1,842,710 | + | C1H8g22646 | C2H8g03239 | LOC_Os08g04620 | Os08g0141300 | OsVST1 | Detail |
| CX8g051133 | 8:1,844,946-1,849,509 | - | C1H8g14043 | C2H8g15761 | LOC_Os08g04630 | Os08g0141400 | - | Detail |
| CX8g051713 | 8:1,860,886-1,861,237 | + | C1H8g17138 | - | - | - | - | Detail |