| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H1g02341 | 1:19,552-27,397 | + | C2H1g13015 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C1H1g23301 | 1:34,909-38,077 | + | C2H1g25732 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C1H1g05541 | 1:38,658-42,693 | + | C2H1g24136 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C1H1g18141 | 1:45,137-49,100 | + | C2H1g01770 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C1H1g06702 | 1:49,316-50,669 | + | C2H1g21686 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C1H1g15122 | 1:53,886-58,091 | + | C2H1g03140 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C1H1g26676 | 1:58,983-64,706 | + | C2H1g12741 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C1H1g29605 | 1:68,013-72,703 | + | C2H1g30020 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C1H1g15874 | 1:72,685-75,717 | - | C2H1g01369 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C1H1g31238 | 1:79,440-86,394 | + | C2H1g16597 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C1H1g30351 | 1:88,972-90,382 | + | C2H1g26722 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C1H1g07147 | 1:93,453-96,885 | + | C2H1g16862 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C1H1g23624 | 1:103,904-104,966 | + | C2H1g21224 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C1H1g19237 | 1:106,332-109,626 | + | C2H1g12981 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C1H1g02228 | 1:110,056-112,714 | + | C2H1g13148 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C1H1g19000 | 1:113,782-115,921 | + | C2H1g25133 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| C1H1g20467 | 1:116,248-118,728 | + | C2H1g01047 | CX1g001371 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| C1H1g21121 | 1:119,474-124,658 | + | C2H1g05282 | CX1g006904 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| C1H1g31375 | 1:129,470-130,340 | - | C2H1g27348 | CX1g001497 | LOC_Os01g01340 | Os01g0102900 | LIR1, Lir1 | Detail |
| C1H1g31418 | 1:131,158-133,161 | - | C2H1g25360 | CX1g000859 | LOC_Os01g01350 | Os01g0103000 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H4g24183 | 4:20,704,295-20,704,659 | + | C1H4g27434 | - | - | - | - | Detail |
| C2H4g27287 | 4:20,704,985-20,708,292 | + | C1H4g22198 | CX4g035420 | LOC_Os04g40490 | Os04g0480900 | - | Detail |
| C2H4g06758 | 4:20,710,139-20,713,950 | + | C1H4g12967 | CX4g035420 | LOC_Os04g40500 | Os04g0481000 | - | Detail |
| C2H4g19832 | 4:20,715,316-20,717,882 | + | C1H4g09900 | CX4g035145 | LOC_Os04g40510 | Os04g0481200 | - | Detail |
| C2H4g27069 | 4:20,716,488-20,734,818 | - | C1H4g30807 | CX4g033422 | LOC_Os04g40520 | Os04g0481100 | - | Detail |
| C2H4g01816 | 4:20,735,906-20,737,105 | + | C1H4g28363 | CX4g032691 | LOC_Os04g40530 | Os04g0481300 | - | Detail |
| C2H4g14800 | 4:20,737,582-20,739,394 | - | C1H4g26467 | CX4g033470 | LOC_Os04g40540 | Os04g0481400 | PIMT2, OsPIMT2 | Detail |
| C2H4g02100 | 4:20,741,326-20,742,355 | - | C1H4g30891 | - | LOC_Os04g40550 | Os04g0481500 | - | Detail |
| C2H4g18454 | 4:20,750,458-20,751,867 | - | C1H4g26639 | CX4g032082 | LOC_Os04g40560 | Os04g0481600 | - | Detail |
| C2H4g05659 | 4:20,757,988-20,758,541 | + | - | - | - | - | - | Detail |
| C2H4g19764 | 4:20,759,868-20,760,962 | + | C1H4g04703 | CX4g036548 | LOC_Os04g40570 | Os04g0642000 | - | Detail |
| C2H4g05692 | 4:20,761,058-20,763,994 | + | C1H4g04703 | CX4g036548 | LOC_Os04g40570 | Os04g0481700 | - | Detail |
| C2H4g21164 | 4:20,764,371-20,765,423 | - | C1H4g22949 | CX4g034428 | LOC_Os04g40580 | Os04g0481800 | - | Detail |
| C2H4g02557 | 4:20,767,005-20,768,042 | - | C1H4g22949 | CX4g032875 | LOC_Os04g40590 | Os04g0481900 | - | Detail |
| C2H4g06893 | 4:20,768,942-20,770,314 | - | C1H4g19577 | CX4g033202 | LOC_Os04g40600 | Os04g0482000 | - | Detail |
| C2H4g14421 | 4:20,771,745-20,773,439 | - | C1H4g05922 | CX4g035067 | LOC_Os04g40620 | Os04g0482100 | - | Detail |
| C2H4g11308 | 4:20,774,733-20,775,821 | - | - | CX4g032530 | LOC_Os08g05140 | - | - | Detail |
| C2H4g28709 | 4:20,775,222-20,776,115 | + | - | - | - | - | - | Detail |
| C2H4g11201 | 4:20,786,172-20,788,357 | + | C1H4g16338 | CX4g036562 | LOC_Os04g40630 | Os04g0482300 | - | Detail |
| C2H4g13783 | 4:20,793,978-20,794,303 | - | C1H4g12073 | CX4g036028 | LOC_Os04g40640 | Os04g0482600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002998 | 1:27,959,512-27,962,932 | - | C1H1g31289 | C2H1g11065 | LOC_Os01g54480 | Os01g0748600 | - | Detail |
| CX1g002746 | 1:27,969,450-27,970,279 | + | C1H1g13303 | C2H1g14520 | LOC_Os01g54490 | - | - | Detail |
| CX1g004481 | 1:27,971,391-27,971,615 | + | C1H1g13303 | - | LOC_Os01g54490 | Os01g0748800 | - | Detail |
| CX1g002648 | 1:27,976,950-27,977,312 | + | C1H1g07195 | C2H1g25503 | - | - | - | Detail |
| CX1g006043 | 1:27,977,941-27,980,886 | + | C1H1g04026 | C2H1g05314 | LOC_Os01g54510 | Os01g0748900 | - | Detail |
| CX1g005528 | 1:27,984,978-27,987,007 | + | C1H1g06199 | C2H1g08416 | LOC_Os01g54515 | Os01g0748950 | OsNPF4.5 | Detail |
| CX1g000885 | 1:27,987,528-27,988,382 | + | C1H1g21519 | C2H1g22814 | LOC_Os01g54520 | Os01g0749000 | - | Detail |
| CX1g004193 | 1:27,989,358-27,991,815 | + | C1H1g06931 | C2H1g20660 | LOC_Os01g54530 | Os01g0749100 | - | Detail |
| CX1g000277 | 1:27,992,695-27,994,741 | + | C1H1g02075 | C2H1g21635 | LOC_Os01g54540 | Os01g0749200 | WLP1, cp rpl13, cp RPL13 | Detail |
| CX1g005465 | 1:27,996,015-27,997,920 | + | C1H1g00896 | C2H1g02265 | LOC_Os01g54550 | Os01g0749300 | HSFA4A, OsHsfA4a, OsHsfA4b, OsHsf-04, HSFA4B, HSF04, OsHSF9, RHSF9, HSF9 | Detail |
| CX1g003457 | 1:27,999,490-28,002,885 | - | C1H1g09179 | C2H1g14114 | LOC_Os01g54560 | Os01g0749400 | - | Detail |
| CX1g000054 | 1:28,015,790-28,016,761 | + | C1H1g21052 | - | LOC_Os01g54570 | Os01g0511400 | - | Detail |
| CX1g003630 | 1:28,019,683-28,023,982 | + | C1H1g19262 | C2H1g10922 | LOC_Os01g54580 | Os01g0749900 | - | Detail |
| CX1g000465 | 1:28,028,353-28,031,625 | + | C1H1g17809 | C2H1g29233 | LOC_Os01g54590 | Os01g0750000 | - | Detail |
| CX1g004996 | 1:28,034,699-28,036,130 | - | C1H1g24495 | C2H1g09211 | LOC_Os01g54600 | Os01g0750100 | WRKY13, OsWRKY13 | Detail |
| CX1g004798 | 1:28,041,197-28,041,550 | + | - | - | - | - | - | Detail |
| CX1g006527 | 1:28,045,490-28,050,712 | + | C1H1g00277 | C2H1g25863 | LOC_Os01g54620 | Os01g0750300 | - | Detail |
| CX1g001248 | 1:28,067,029-28,070,168 | - | C1H1g02730 | C2H1g03544 | LOC_Os01g54700 | Os01g0750600 | - | Detail |
| CX1g000813 | 1:28,082,494-28,082,963 | - | C1H1g08638 | C2H1g05225 | LOC_Os01g53140 | Os01g0750800 | - | Detail |
| CX1g003810 | 1:28,085,281-28,085,475 | + | - | C2H1g07602 | - | Os01g0750900 | - | Detail |