| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H2g20224 | 2:22,256,314-22,258,331 | + | C2H2g15776 | CX2g022170 | LOC_Os02g39390 | Os02g0606700 | RSS1 | Detail |
| C1H2g27913 | 2:22,259,115-22,261,278 | + | C2H2g29237 | CX2g018997 | LOC_Os02g39400 | Os02g0606800 | - | Detail |
| C1H2g08347 | 2:22,262,589-22,267,169 | - | C2H2g26702 | CX2g019749 | LOC_Os02g39470 | Os02g0606900 | - | Detail |
| C1H2g10387 | 2:22,267,693-22,268,425 | - | C2H2g08348 | - | LOC_Os02g39410 | - | - | Detail |
| C1H2g21841 | 2:22,271,020-22,272,357 | - | C2H2g18169 | CX2g021356 | LOC_Os02g39420 | Os02g0607000 | - | Detail |
| C1H2g22579 | 2:22,281,177-22,282,376 | - | C2H2g04655 | CX2g023372 | LOC_Os02g39430 | Os02g0607100 | - | Detail |
| C1H2g06459 | 2:22,293,450-22,296,962 | - | C2H2g23887 | CX2g019749 | LOC_Os02g39470 | Os02g0606900 | - | Detail |
| C1H2g25391 | 2:22,300,232-22,305,409 | - | C2H2g28959 | CX2g020559 | LOC_Os02g39480 | Os02g0607500 | - | Detail |
| C1H2g17149 | 2:22,314,423-22,319,247 | - | C2H2g15517 | CX2g021915 | LOC_Os02g39490 | Os02g0607700 | - | Detail |
| C1H2g26003 | 2:22,328,631-22,330,612 | + | - | CX2g020144 | - | - | - | Detail |
| C1H2g26501 | 2:22,335,974-22,336,963 | + | C2H2g03833 | CX2g021064 | LOC_Os02g39510 | Os02g0608000 | - | Detail |
| C1H2g11368 | 2:22,340,580-22,346,076 | + | C2H2g15229 | CX2g022691 | LOC_Os02g39520 | Os02g0608100 | - | Detail |
| C1H2g01417 | 2:22,348,039-22,352,718 | + | C2H2g28600 | CX2g022691 | LOC_Os02g39540 | Os02g0608300 | - | Detail |
| C1H2g14033 | 2:22,353,382-22,361,976 | - | C2H2g19218 | CX2g023818 | LOC_Os02g39550 | Os02g0608400 | - | Detail |
| C1H2g07169 | 2:22,364,605-22,369,688 | - | C2H2g21219 | CX2g019746 | LOC_Os02g39560 | Os02g0608500 | - | Detail |
| C1H2g27696 | 2:22,375,271-22,379,822 | + | C2H2g15416 | CX2g023427 | LOC_Os02g39570 | Os02g0608600 | - | Detail |
| C1H2g24103 | 2:22,380,511-22,381,916 | + | C2H2g09233 | CX2g024711 | LOC_Os02g39580 | Os02g0608700 | - | Detail |
| C1H2g09025 | 2:22,382,502-22,383,716 | - | C2H2g25183 | CX2g022288 | LOC_Os02g39590 | Os02g0608801 | - | Detail |
| C1H2g09645 | 2:22,383,940-22,388,198 | - | C2H2g23083 | CX2g022666 | LOC_Os02g39600 | Os02g0608900 | - | Detail |
| C1H2g17784 | 2:22,395,970-22,396,515 | + | C2H2g21957 | CX2g023597 | LOC_Os02g39620 | Os02g0609200 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002998 | 1:27,959,512-27,962,932 | - | C1H1g31289 | C2H1g11065 | LOC_Os01g54480 | Os01g0748600 | - | Detail |
| CX1g002746 | 1:27,969,450-27,970,279 | + | C1H1g13303 | C2H1g14520 | LOC_Os01g54490 | - | - | Detail |
| CX1g004481 | 1:27,971,391-27,971,615 | + | C1H1g13303 | - | LOC_Os01g54490 | Os01g0748800 | - | Detail |
| CX1g002648 | 1:27,976,950-27,977,312 | + | C1H1g07195 | C2H1g25503 | - | - | - | Detail |
| CX1g006043 | 1:27,977,941-27,980,886 | + | C1H1g04026 | C2H1g05314 | LOC_Os01g54510 | Os01g0748900 | - | Detail |
| CX1g005528 | 1:27,984,978-27,987,007 | + | C1H1g06199 | C2H1g08416 | LOC_Os01g54515 | Os01g0748950 | OsNPF4.5 | Detail |
| CX1g000885 | 1:27,987,528-27,988,382 | + | C1H1g21519 | C2H1g22814 | LOC_Os01g54520 | Os01g0749000 | - | Detail |
| CX1g004193 | 1:27,989,358-27,991,815 | + | C1H1g06931 | C2H1g20660 | LOC_Os01g54530 | Os01g0749100 | - | Detail |
| CX1g000277 | 1:27,992,695-27,994,741 | + | C1H1g02075 | C2H1g21635 | LOC_Os01g54540 | Os01g0749200 | WLP1, cp rpl13, cp RPL13 | Detail |
| CX1g005465 | 1:27,996,015-27,997,920 | + | C1H1g00896 | C2H1g02265 | LOC_Os01g54550 | Os01g0749300 | HSFA4A, OsHsfA4a, OsHsfA4b, OsHsf-04, HSFA4B, HSF04, OsHSF9, RHSF9, HSF9 | Detail |
| CX1g003457 | 1:27,999,490-28,002,885 | - | C1H1g09179 | C2H1g14114 | LOC_Os01g54560 | Os01g0749400 | - | Detail |
| CX1g000054 | 1:28,015,790-28,016,761 | + | C1H1g21052 | - | LOC_Os01g54570 | Os01g0511400 | - | Detail |
| CX1g003630 | 1:28,019,683-28,023,982 | + | C1H1g19262 | C2H1g10922 | LOC_Os01g54580 | Os01g0749900 | - | Detail |
| CX1g000465 | 1:28,028,353-28,031,625 | + | C1H1g17809 | C2H1g29233 | LOC_Os01g54590 | Os01g0750000 | - | Detail |
| CX1g004996 | 1:28,034,699-28,036,130 | - | C1H1g24495 | C2H1g09211 | LOC_Os01g54600 | Os01g0750100 | WRKY13, OsWRKY13 | Detail |
| CX1g004798 | 1:28,041,197-28,041,550 | + | - | - | - | - | - | Detail |
| CX1g006527 | 1:28,045,490-28,050,712 | + | C1H1g00277 | C2H1g25863 | LOC_Os01g54620 | Os01g0750300 | - | Detail |
| CX1g001248 | 1:28,067,029-28,070,168 | - | C1H1g02730 | C2H1g03544 | LOC_Os01g54700 | Os01g0750600 | - | Detail |
| CX1g000813 | 1:28,082,494-28,082,963 | - | C1H1g08638 | C2H1g05225 | LOC_Os01g53140 | Os01g0750800 | - | Detail |
| CX1g003810 | 1:28,085,281-28,085,475 | + | - | C2H1g07602 | - | Os01g0750900 | - | Detail |