| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H1g02341 | 1:19,552-27,397 | + | C2H1g13015 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C1H1g23301 | 1:34,909-38,077 | + | C2H1g25732 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C1H1g05541 | 1:38,658-42,693 | + | C2H1g24136 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C1H1g18141 | 1:45,137-49,100 | + | C2H1g01770 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C1H1g06702 | 1:49,316-50,669 | + | C2H1g21686 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C1H1g15122 | 1:53,886-58,091 | + | C2H1g03140 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C1H1g26676 | 1:58,983-64,706 | + | C2H1g12741 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C1H1g29605 | 1:68,013-72,703 | + | C2H1g30020 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C1H1g15874 | 1:72,685-75,717 | - | C2H1g01369 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C1H1g31238 | 1:79,440-86,394 | + | C2H1g16597 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C1H1g30351 | 1:88,972-90,382 | + | C2H1g26722 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C1H1g07147 | 1:93,453-96,885 | + | C2H1g16862 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C1H1g23624 | 1:103,904-104,966 | + | C2H1g21224 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C1H1g19237 | 1:106,332-109,626 | + | C2H1g12981 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C1H1g02228 | 1:110,056-112,714 | + | C2H1g13148 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C1H1g19000 | 1:113,782-115,921 | + | C2H1g25133 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| C1H1g20467 | 1:116,248-118,728 | + | C2H1g01047 | CX1g001371 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| C1H1g21121 | 1:119,474-124,658 | + | C2H1g05282 | CX1g006904 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| C1H1g31375 | 1:129,470-130,340 | - | C2H1g27348 | CX1g001497 | LOC_Os01g01340 | Os01g0102900 | LIR1, Lir1 | Detail |
| C1H1g31418 | 1:131,158-133,161 | - | C2H1g25360 | CX1g000859 | LOC_Os01g01350 | Os01g0103000 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H2g11742 | 2:5,273,597-5,275,375 | + | C1H2g24396 | CX2g021980 | LOC_Os02g10800 | Os02g0202400 | BT1-1, OsBT1-1, OsEnS-29 | Detail |
| C2H2g19152 | 2:5,276,189-5,277,880 | - | C1H2g08933 | CX2g024114 | LOC_Os02g10810 | Os02g0202500 | - | Detail |
| C2H2g03245 | 2:5,280,679-5,283,557 | - | C1H2g01124 | CX2g021583 | LOC_Os02g10820 | Os02g0202600 | - | Detail |
| C2H2g06319 | 2:5,284,423-5,289,562 | - | C1H2g31302 | CX2g022814 | LOC_Os02g10830 | Os02g0202700 | OsSAT1;2 | Detail |
| C2H2g07043 | 2:5,291,017-5,294,153 | - | C1H2g29373 | CX2g019052 | LOC_Os02g10850 | Os02g0202900 | - | Detail |
| C2H2g24991 | 2:5,296,406-5,298,717 | - | C1H2g02349 | CX2g019052 | LOC_Os02g10860 | Os02g0203000 | OsHY5L1, OsbZIP18 | Detail |
| C2H2g13298 | 2:5,322,255-5,323,208 | - | - | - | - | Os02g0578201 | - | Detail |
| C2H2g10759 | 2:5,330,786-5,335,148 | - | C1H2g24176 | CX2g020524 | LOC_Os02g10900 | Os02g0203500 | RLS1 | Detail |
| C2H2g18458 | 2:5,338,312-5,339,617 | - | C1H2g09288 | CX2g021071 | LOC_Os02g10920 | Os02g0203700 | SRZ1 | Detail |
| C2H2g20592 | 2:5,353,511-5,361,697 | + | C1H2g01355 | CX2g021033 | LOC_Os02g10970 | Os02g0121300 | LRT2, CYC2, cyc2*, cyc2, OsCYP2, Cyp2, OsCYP19-2, CYP19-2, OsCYP-2, OsCyp2-P, OsCyp2, OsCYP19-1, LRT2/OsCYP2, lrt2*, lrt2 | Detail |
| C2H2g16217 | 2:5,363,787-5,366,941 | + | C1H2g02729 | CX2g020882 | LOC_Os02g10990 | Os02g0204400 | - | Detail |
| C2H2g15057 | 2:5,370,856-5,372,360 | + | C1H2g29802 | CX2g024407 | LOC_Os02g11000 | Os02g0204500 | - | Detail |
| C2H2g26988 | 2:5,391,116-5,393,386 | - | C1H2g04626 | CX2g022229 | LOC_Os02g11020 | Os02g0204700 | - | Detail |
| C2H2g03770 | 2:5,423,064-5,425,361 | - | C1H2g15482 | CX2g019164 | LOC_Os02g11030 | Os02g0205000 | - | Detail |
| C2H2g05927 | 2:5,426,667-5,427,963 | - | C1H2g23876 | CX2g022500 | LOC_Os02g11040 | Os02g0205200 | - | Detail |
| C2H2g06065 | 2:5,433,561-5,438,148 | - | C1H2g25099 | CX2g023949 | LOC_Os02g11050 | Os02g0205300 | - | Detail |
| C2H2g04587 | 2:5,440,616-5,445,478 | + | C1H2g05033 | CX2g022352 | LOC_Os02g11060 | Os02g0205400 | - | Detail |
| C2H2g22003 | 2:5,446,223-5,447,903 | - | C1H2g08007 | CX2g023216 | LOC_Os02g11070 | Os02g0205500 | - | Detail |
| C2H2g16132 | 2:5,478,867-5,480,336 | - | C1H2g21297 | CX2g022369 | LOC_Os02g11110 | Os02g0206100 | - | Detail |
| C2H2g24159 | 2:5,485,258-5,486,748 | - | C1H2g21297 | CX2g022369 | LOC_Os02g11130 | Os02g0206400 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX8g054435 | 8:1,274,835-1,274,985 | - | - | - | - | - | - | Detail |
| CX8g051536 | 8:1,275,728-1,277,962 | + | C1H8g04573 | C2H4g27229 | LOC_Os08g03260 | Os08g0126000 | - | Detail |
| CX8g050921 | 8:1,279,624-1,281,741 | - | C1H8g04573 | C2H4g27229 | LOC_Os08g03270 | Os08g0126100 | - | Detail |
| CX8g051351 | 8:1,290,073-1,293,219 | + | C1H8g12680 | C2H8g16756 | LOC_Os08g03290 | Os08g0126300 | - | Detail |
| CX8g050631 | 8:1,300,902-1,303,630 | + | C1H8g26710 | C2H8g27307 | LOC_Os08g03310 | Os08g0126700 | - | Detail |
| CX8g051754 | 8:1,323,768-1,325,500 | + | C1H8g18978 | C2H8g30409 | LOC_Os08g03350 | Os08g0127100 | - | Detail |
| CX8g051716 | 8:1,326,914-1,332,576 | - | C1H8g25002 | C2H8g24442 | LOC_Os08g03360 | Os08g0127300 | - | Detail |
| CX8g052727 | 8:1,336,350-1,338,308 | + | C1H8g30739 | C2H8g12783 | LOC_Os08g03370 | Os08g0127500 | - | Detail |
| CX8g054521 | 8:1,339,371-1,342,975 | - | C1H8g29628 | C2H8g13939 | LOC_Os08g03380 | Os08g0127600 | - | Detail |
| CX8g053032 | 8:1,343,328-1,346,896 | + | C1H8g22690 | C2H8g02313 | LOC_Os08g03390 | Os08g0127700 | - | Detail |
| CX8g050855 | 8:1,347,620-1,348,387 | - | C1H8g31738 | - | LOC_Os08g03400 | Os08g0127800 | - | Detail |
| CX8g050574 | 8:1,356,262-1,358,010 | + | C1H8g06039 | C2H8g27149 | LOC_Os08g03410 | Os08g0127900 | - | Detail |
| CX8g051419 | 8:1,359,349-1,361,631 | + | C1H8g28965 | C2H8g29645 | LOC_Os08g03420 | Os08g0128000 | - | Detail |
| CX8g053034 | 8:1,365,570-1,368,277 | + | C1H8g09837 | C2H8g24700 | LOC_Os08g03430 | Os08g0128200 | - | Detail |
| CX8g054820 | 8:1,369,276-1,374,295 | - | C1H8g07007 | C2H8g15169 | LOC_Os08g03440 | Os08g0128300 | - | Detail |
| CX8g053232 | 8:1,378,261-1,380,102 | + | C1H8g19307 | C2H8g20609 | LOC_Os08g03450 | Os08g0128500 | - | Detail |
| CX8g053799 | 8:1,419,968-1,423,527 | - | C1H8g21199 | C2H8g01654 | LOC_Os08g03560 | Os08g0129600 | - | Detail |
| CX8g050636 | 8:1,433,217-1,433,366 | - | - | - | - | - | - | Detail |
| CX8g053008 | 8:1,434,264-1,438,466 | + | C1H8g09483 | C2H8g03184 | LOC_Os08g03570 | Os08g0129700 | - | Detail |
| CX8g053758 | 8:1,443,004-1,443,189 | + | - | - | LOC_Os08g03579 | Os08g0129800 | - | Detail |