| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H3g11455 | 3:5,667,589-5,676,280 | - | C2H3g25606 | CX3g031100 | LOC_Os03g12160 | Os03g0221800 | - | Detail |
| C1H3g05328 | 3:5,679,033-5,682,233 | - | C2H3g28200 | CX3g028642 | LOC_Os03g12180 | Os03g0222100 | - | Detail |
| C1H3g22084 | 3:5,683,225-5,684,571 | - | - | CX1g001382 | - | - | - | Detail |
| C1H3g10920 | 3:5,689,450-5,690,709 | + | C2H3g21744 | CX3g029448 | LOC_Os03g12210 | Os03g0222500 | - | Detail |
| C1H3g07232 | 3:5,698,966-5,701,249 | + | C2H3g09344 | CX3g031317 | LOC_Os03g12230 | Os03g0222600 | - | Detail |
| C1H3g04972 | 3:5,702,621-5,707,780 | + | C2H3g04698 | CX3g028958 | LOC_Os03g12236 | Os03g0222800 | - | Detail |
| C1H3g26972 | 3:5,709,181-5,711,242 | + | C2H3g19892 | CX3g027447 | LOC_Os03g12238 | - | - | Detail |
| C1H3g14957 | 3:5,715,416-5,719,293 | + | C2H3g10667 | CX3g031278 | LOC_Os03g12250 | Os03g0223000 | - | Detail |
| C1H3g14297 | 3:5,724,282-5,725,868 | - | C2H3g29015 | CX3g030840 | LOC_Os03g12260 | Os03g0223100 | CYP94D15, OsCYP94D15 | Detail |
| C1H3g13087 | 3:5,730,852-5,733,610 | + | C2H3g13113 | CX3g029663 | LOC_Os03g12270 | Os03g0223200 | - | Detail |
| C1H3g19225 | 3:5,739,506-5,740,695 | - | C2H3g16993 | CX3g028859 | LOC_Os03g12290 | Os03g0223400 | GLN1;2, OsGLN1;2, GSr, RGS8, OsGS1;2, GS1;2, GS1 | Detail |
| C1H3g05930 | 3:5,741,048-5,743,366 | - | C2H3g28472 | CX3g028859 | LOC_Os03g12290 | Os03g0223400 | GLN1;2, OsGLN1;2, GSr, RGS8, OsGS1;2, GS1;2, GS1 | Detail |
| C1H3g02751 | 3:5,747,807-5,755,905 | - | C2H3g01042 | CX3g025777 | LOC_Os03g12300 | Os03g0223700 | - | Detail |
| C1H3g05662 | 3:5,768,070-5,772,723 | + | C2H3g20060 | CX3g029397 | LOC_Os03g12320 | Os03g0223900 | OsLPXC | Detail |
| C1H3g16565 | 3:5,781,460-5,786,781 | + | C2H3g29213 | CX3g029992 | LOC_Os03g12350 | Os03g0224200 | - | Detail |
| C1H3g12418 | 3:5,787,327-5,791,771 | - | C2H3g11335 | CX3g029383 | LOC_Os03g12360 | Os03g0224300 | - | Detail |
| C1H3g18389 | 3:5,803,605-5,807,389 | + | C2H3g05885 | CX3g025920 | LOC_Os03g12370 | Os03g0224700 | - | Detail |
| C1H3g09012 | 3:5,811,317-5,812,336 | - | C2H3g25300 | CX3g025136 | LOC_Os03g12390 | Os03g0225100 | MPKK10.2, OsMKK10-2, MKK10-2D | Detail |
| C1H3g14793 | 3:5,818,975-5,823,594 | - | C2H3g05543 | CX3g027495 | LOC_Os03g12414 | Os03g0225200 | - | Detail |
| C1H3g12506 | 3:5,824,997-5,826,409 | - | C2H3g22350 | CX3g027176 | LOC_Os03g12430 | Os03g0225300 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX8g054435 | 8:1,274,835-1,274,985 | - | - | - | - | - | - | Detail |
| CX8g051536 | 8:1,275,728-1,277,962 | + | C1H8g04573 | C2H4g27229 | LOC_Os08g03260 | Os08g0126000 | - | Detail |
| CX8g050921 | 8:1,279,624-1,281,741 | - | C1H8g04573 | C2H4g27229 | LOC_Os08g03270 | Os08g0126100 | - | Detail |
| CX8g051351 | 8:1,290,073-1,293,219 | + | C1H8g12680 | C2H8g16756 | LOC_Os08g03290 | Os08g0126300 | - | Detail |
| CX8g050631 | 8:1,300,902-1,303,630 | + | C1H8g26710 | C2H8g27307 | LOC_Os08g03310 | Os08g0126700 | - | Detail |
| CX8g051754 | 8:1,323,768-1,325,500 | + | C1H8g18978 | C2H8g30409 | LOC_Os08g03350 | Os08g0127100 | - | Detail |
| CX8g051716 | 8:1,326,914-1,332,576 | - | C1H8g25002 | C2H8g24442 | LOC_Os08g03360 | Os08g0127300 | - | Detail |
| CX8g052727 | 8:1,336,350-1,338,308 | + | C1H8g30739 | C2H8g12783 | LOC_Os08g03370 | Os08g0127500 | - | Detail |
| CX8g054521 | 8:1,339,371-1,342,975 | - | C1H8g29628 | C2H8g13939 | LOC_Os08g03380 | Os08g0127600 | - | Detail |
| CX8g053032 | 8:1,343,328-1,346,896 | + | C1H8g22690 | C2H8g02313 | LOC_Os08g03390 | Os08g0127700 | - | Detail |
| CX8g050855 | 8:1,347,620-1,348,387 | - | C1H8g31738 | - | LOC_Os08g03400 | Os08g0127800 | - | Detail |
| CX8g050574 | 8:1,356,262-1,358,010 | + | C1H8g06039 | C2H8g27149 | LOC_Os08g03410 | Os08g0127900 | - | Detail |
| CX8g051419 | 8:1,359,349-1,361,631 | + | C1H8g28965 | C2H8g29645 | LOC_Os08g03420 | Os08g0128000 | - | Detail |
| CX8g053034 | 8:1,365,570-1,368,277 | + | C1H8g09837 | C2H8g24700 | LOC_Os08g03430 | Os08g0128200 | - | Detail |
| CX8g054820 | 8:1,369,276-1,374,295 | - | C1H8g07007 | C2H8g15169 | LOC_Os08g03440 | Os08g0128300 | - | Detail |
| CX8g053232 | 8:1,378,261-1,380,102 | + | C1H8g19307 | C2H8g20609 | LOC_Os08g03450 | Os08g0128500 | - | Detail |
| CX8g053799 | 8:1,419,968-1,423,527 | - | C1H8g21199 | C2H8g01654 | LOC_Os08g03560 | Os08g0129600 | - | Detail |
| CX8g050636 | 8:1,433,217-1,433,366 | - | - | - | - | - | - | Detail |
| CX8g053008 | 8:1,434,264-1,438,466 | + | C1H8g09483 | C2H8g03184 | LOC_Os08g03570 | Os08g0129700 | - | Detail |
| CX8g053758 | 8:1,443,004-1,443,189 | + | - | - | LOC_Os08g03579 | Os08g0129800 | - | Detail |