| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H3g22493 | 3:32,718,291-32,724,107 | + | C2H3g09641 | CX3g029422 | LOC_Os03g62090 | Os03g0837100 | - | Detail |
| C1H3g21977 | 3:32,733,115-32,733,312 | + | C2H3g16015 | - | LOC_Os03g62110 | Os03g0837300 | OsNaPRT1, LTS1 | Detail |
| C1H3g11581 | 3:32,733,442-32,739,587 | + | C2H3g09352 | CX3g030206 | LOC_Os03g62110 | Os04g0429800 | - | Detail |
| C1H3g11651 | 3:32,753,523-32,755,935 | - | C2H3g20340 | CX3g026601 | LOC_Os03g62160 | Os03g0837800 | - | Detail |
| C1H3g23631 | 3:32,757,417-32,762,648 | + | C2H3g14011 | CX3g030122 | LOC_Os03g62170 | Os03g0837900 | - | Detail |
| C1H3g04060 | 3:32,774,511-32,777,956 | + | C2H3g21930 | CX3g029514 | LOC_Os03g62200 | Os03g0838400 | - | Detail |
| C1H3g30110 | 3:32,777,139-32,779,369 | - | C2H3g30547 | - | - | - | - | Detail |
| C1H3g03475 | 3:32,778,104-32,778,490 | + | C2H3g29109 | CX3g029120 | LOC_Os03g62210 | Os03g0838500 | - | Detail |
| C1H3g08024 | 3:32,786,821-32,788,242 | - | C2H3g14459 | CX3g028242 | LOC_Os03g62240 | Os03g0838900 | - | Detail |
| C1H3g14166 | 3:32,789,738-32,792,287 | - | C2H3g18580 | CX3g026663 | LOC_Os03g62250 | Os03g0839000 | - | Detail |
| C1H3g19313 | 3:32,793,456-32,797,258 | - | C2H3g04219 | CX3g026956 | LOC_Os03g62260 | Os03g0839100 | - | Detail |
| C1H3g09907 | 3:32,804,564-32,808,236 | + | C2H3g25899 | CX3g025647 | LOC_Os03g62270 | Os03g0839200 | SMG4 | Detail |
| C1H3g11170 | 3:32,822,347-32,822,757 | - | C2H3g29754 | CX3g026655 | LOC_Os03g62330 | Os03g0839800 | - | Detail |
| C1H3g19828 | 3:32,826,289-32,830,846 | - | C2H3g16491 | CX3g027925 | LOC_Os03g62340 | Os03g0839900 | - | Detail |
| C1H3g10496 | 3:32,845,228-32,854,529 | - | C2H3g23134 | CX3g027463 | LOC_Os03g62388 | Os03g0840500 | - | Detail |
| C1H3g17885 | 3:32,855,180-32,859,042 | - | C2H3g17763 | CX3g031342 | LOC_Os03g62400 | Os03g0627100 | - | Detail |
| C1H3g03752 | 3:32,860,263-32,864,783 | - | C2H3g05770 | CX3g030069 | LOC_Os03g62410 | Os03g0840800 | - | Detail |
| C1H3g30697 | 3:32,866,112-32,868,876 | - | C2H3g27419 | CX3g028979 | LOC_Os03g62420 | Os03g0840900 | DVB1 | Detail |
| C1H3g04157 | 3:32,870,803-32,875,152 | - | C2H3g06584 | CX3g025236 | LOC_Os03g62430 | Os03g0841100 | - | Detail |
| C1H3g28796 | 3:32,878,895-32,880,325 | - | C2H3g16997 | CX3g026521 | LOC_Os03g62480 | Os03g0841600 | OsUGT706C2 | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX7g047275 | 7:24,063,616-24,067,897 | + | C1H7g11299 | C2H7g22068 | LOC_Os07g48430 | Os07g0682800 | OsAPY3, OsAPY, RTH1 | Detail |
| CX7g047537 | 7:24,070,648-24,070,857 | - | - | - | - | - | - | Detail |
| CX7g047935 | 7:24,094,570-24,096,220 | + | C1H7g23344 | C2H7g15907 | LOC_Os07g48450 | Os07g0683200 | OsNAC103 | Detail |
| CX7g047088 | 7:24,098,861-24,100,688 | + | C1H7g25988 | C2H7g07345 | LOC_Os07g48490 | Os07g0683900 | - | Detail |
| CX7g048600 | 7:24,108,707-24,110,110 | + | C1H7g25988 | C2H7g26142 | LOC_Os07g48460 | Os07g0683600 | OsEULD2 | Detail |
| CX7g046590 | 7:24,119,820-24,121,055 | - | C1H7g12898 | C2H7g28195 | LOC_Os07g48510 | Os07g0684100 | - | Detail |
| CX7g047739 | 7:24,135,546-24,136,635 | - | C1H7g14214 | C2H7g19082 | LOC_Os07g48550 | Os07g0684800 | - | Detail |
| CX7g049740 | 7:24,166,535-24,168,491 | + | C1H7g16982 | C2H7g21427 | LOC_Os07g48560 | Os07g0684900 | WOX11, OsWOX11, Os WOX11, OsWOX12A | Detail |
| CX7g050407 | 7:24,171,567-24,175,086 | - | C1H7g24592 | C2H7g27364 | LOC_Os07g48570 | Os07g0685000 | OsCDF3, RDD2 | Detail |
| CX7g046130 | 7:24,181,099-24,182,763 | - | C1H7g20266 | C2H7g00607 | LOC_Os07g48596 | Os07g0685300 | - | Detail |
| CX7g048563 | 7:24,185,808-24,198,160 | - | C1H7g00115 | C2H7g22371 | LOC_Os07g48602 | Os07g0685400 | - | Detail |
| CX7g049406 | 7:24,198,828-24,200,418 | + | C1H7g07276 | C2H7g15109 | LOC_Os07g48610 | Os07g0685500 | - | Detail |
| CX7g046344 | 7:24,203,195-24,203,503 | - | - | - | - | - | - | Detail |
| CX7g050266 | 7:24,212,440-24,214,182 | - | - | C2H7g23222 | LOC_Os07g48630 | Os07g0685700 | EIL2, OsEIL2 | Detail |
| CX7g049228 | 7:24,220,411-24,223,288 | + | C1H7g05652 | C2H7g06259 | LOC_Os07g48640 | Os07g0685800 | - | Detail |
| CX7g047810 | 7:24,223,805-24,231,729 | + | C1H7g29619 | C2H7g03520 | LOC_Os07g48650 | Os07g0685900 | - | Detail |
| CX7g048415 | 7:24,241,131-24,242,684 | + | C1H7g31573 | C2H7g23755 | LOC_Os07g48660 | Os07g0686100 | OsbZIP62 | Detail |
| CX7g049506 | 7:24,244,327-24,244,872 | - | C1H7g28364 | C2H7g19090 | LOC_Os07g48680 | Os07g0686300 | - | Detail |
| CX7g046580 | 7:24,247,447-24,248,074 | + | - | - | - | - | - | Detail |
| CX7g046233 | 7:24,250,973-24,256,405 | - | C1H7g30458 | C2H7g27862 | LOC_Os07g48700 | Os07g0686400 | - | Detail |