| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H3g08097 | 3:31,303,966-31,318,802 | - | C2H3g20910 | CX3g029942 | LOC_Os03g58910 | Os03g0803800 | - | Detail |
| C1H3g06667 | 3:31,319,292-31,323,936 | - | C2H3g11137 | CX3g027632 | LOC_Os03g58920 | Os03g0803900 | - | Detail |
| C1H3g13889 | 3:31,327,556-31,330,061 | + | C2H3g08052 | CX3g025337 | LOC_Os03g58930 | Os03g0804100 | - | Detail |
| C1H3g18947 | 3:31,337,369-31,339,038 | + | C2H3g30090 | CX3g027592 | LOC_Os03g58940 | Os03g0804200 | - | Detail |
| C1H3g06901 | 3:31,339,411-31,340,040 | + | - | - | - | - | - | Detail |
| C1H3g08908 | 3:31,341,706-31,346,966 | - | C2H3g10876 | CX3g024943 | LOC_Os03g58960 | Os03g0804300 | - | Detail |
| C1H3g16246 | 3:31,348,546-31,354,250 | + | C2H3g27290 | CX3g027330 | LOC_Os03g58970 | Os03g0804400 | - | Detail |
| C1H3g07772 | 3:31,361,251-31,366,469 | + | C2H3g08677 | CX3g028935 | LOC_Os03g59020 | Os03g0804800 | - | Detail |
| C1H3g18006 | 3:31,367,537-31,369,493 | - | C2H3g02565 | CX3g027095 | LOC_Os03g59030 | Os03g0804900 | - | Detail |
| C1H3g15435 | 3:31,372,220-31,379,322 | + | C2H3g23943 | CX3g030857 | LOC_Os03g59040 | Os03g0805100 | - | Detail |
| C1H3g07263 | 3:31,379,382-31,384,682 | - | C2H3g11637 | CX3g025026 | LOC_Os03g59050 | Os03g0805200 | - | Detail |
| C1H3g20361 | 3:31,388,921-31,393,492 | + | C2H3g13249 | CX3g030776 | LOC_Os03g59060 | Os03g0805300 | OsPP2A-2 | Detail |
| C1H3g19091 | 3:31,394,936-31,397,184 | - | C2H3g08127 | CX3g031092 | LOC_Os03g59070 | Os03g0805400 | - | Detail |
| C1H3g12066 | 3:31,399,034-31,403,913 | - | C2H3g28737 | CX3g028812 | LOC_Os03g59080 | Os03g0805500 | - | Detail |
| C1H3g30858 | 3:31,406,704-31,409,160 | + | C2H3g24931 | CX3g030524 | LOC_Os03g59110 | Os03g0805600 | - | Detail |
| C1H3g05972 | 3:31,411,591-31,413,933 | + | C2H3g05002 | CX3g030524 | LOC_Os03g59100 | Os03g0805700 | - | Detail |
| C1H3g19569 | 3:31,415,492-31,418,848 | + | C2H3g16039 | CX3g030524 | LOC_Os03g59110 | Os03g0805900 | - | Detail |
| C1H3g19186 | 3:31,420,142-31,420,788 | + | C2H10g26374 | CX10g008540 | - | - | - | Detail |
| C1H3g07939 | 3:31,425,883-31,428,863 | + | C2H3g16313 | CX3g030524 | LOC_Os03g59120 | Os03g0805900 | - | Detail |
| C1H3g06635 | 3:31,429,398-31,433,079 | - | C2H3g13126 | CX3g030941 | LOC_Os03g59160 | Os03g0806400 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX7g047275 | 7:24,063,616-24,067,897 | + | C1H7g11299 | C2H7g22068 | LOC_Os07g48430 | Os07g0682800 | OsAPY3, OsAPY, RTH1 | Detail |
| CX7g047537 | 7:24,070,648-24,070,857 | - | - | - | - | - | - | Detail |
| CX7g047935 | 7:24,094,570-24,096,220 | + | C1H7g23344 | C2H7g15907 | LOC_Os07g48450 | Os07g0683200 | OsNAC103 | Detail |
| CX7g047088 | 7:24,098,861-24,100,688 | + | C1H7g25988 | C2H7g07345 | LOC_Os07g48490 | Os07g0683900 | - | Detail |
| CX7g048600 | 7:24,108,707-24,110,110 | + | C1H7g25988 | C2H7g26142 | LOC_Os07g48460 | Os07g0683600 | OsEULD2 | Detail |
| CX7g046590 | 7:24,119,820-24,121,055 | - | C1H7g12898 | C2H7g28195 | LOC_Os07g48510 | Os07g0684100 | - | Detail |
| CX7g047739 | 7:24,135,546-24,136,635 | - | C1H7g14214 | C2H7g19082 | LOC_Os07g48550 | Os07g0684800 | - | Detail |
| CX7g049740 | 7:24,166,535-24,168,491 | + | C1H7g16982 | C2H7g21427 | LOC_Os07g48560 | Os07g0684900 | WOX11, OsWOX11, Os WOX11, OsWOX12A | Detail |
| CX7g050407 | 7:24,171,567-24,175,086 | - | C1H7g24592 | C2H7g27364 | LOC_Os07g48570 | Os07g0685000 | OsCDF3, RDD2 | Detail |
| CX7g046130 | 7:24,181,099-24,182,763 | - | C1H7g20266 | C2H7g00607 | LOC_Os07g48596 | Os07g0685300 | - | Detail |
| CX7g048563 | 7:24,185,808-24,198,160 | - | C1H7g00115 | C2H7g22371 | LOC_Os07g48602 | Os07g0685400 | - | Detail |
| CX7g049406 | 7:24,198,828-24,200,418 | + | C1H7g07276 | C2H7g15109 | LOC_Os07g48610 | Os07g0685500 | - | Detail |
| CX7g046344 | 7:24,203,195-24,203,503 | - | - | - | - | - | - | Detail |
| CX7g050266 | 7:24,212,440-24,214,182 | - | - | C2H7g23222 | LOC_Os07g48630 | Os07g0685700 | EIL2, OsEIL2 | Detail |
| CX7g049228 | 7:24,220,411-24,223,288 | + | C1H7g05652 | C2H7g06259 | LOC_Os07g48640 | Os07g0685800 | - | Detail |
| CX7g047810 | 7:24,223,805-24,231,729 | + | C1H7g29619 | C2H7g03520 | LOC_Os07g48650 | Os07g0685900 | - | Detail |
| CX7g048415 | 7:24,241,131-24,242,684 | + | C1H7g31573 | C2H7g23755 | LOC_Os07g48660 | Os07g0686100 | OsbZIP62 | Detail |
| CX7g049506 | 7:24,244,327-24,244,872 | - | C1H7g28364 | C2H7g19090 | LOC_Os07g48680 | Os07g0686300 | - | Detail |
| CX7g046580 | 7:24,247,447-24,248,074 | + | - | - | - | - | - | Detail |
| CX7g046233 | 7:24,250,973-24,256,405 | - | C1H7g30458 | C2H7g27862 | LOC_Os07g48700 | Os07g0686400 | - | Detail |