| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H4g02251 | 4:29,440,701-29,440,994 | + | C2H4g07923 | CX4g035528 | LOC_Os04g56610 | - | - | Detail |
| C1H4g07215 | 4:29,444,839-29,449,014 | + | C2H4g09519 | CX4g032531 | LOC_Os04g56620 | Os04g0661600 | OsCNX1 | Detail |
| C1H4g05764 | 4:29,449,074-29,456,814 | - | C2H4g30358 | CX4g035527 | LOC_Os04g56630 | Os04g0661700 | - | Detail |
| C1H4g15510 | 4:29,458,517-29,459,700 | - | C2H4g15418 | CX4g036335 | LOC_Os04g56640 | Os04g0661800 | - | Detail |
| C1H4g17837 | 4:29,461,361-29,465,005 | + | C2H4g25643 | CX4g035742 | LOC_Os04g56646 | Os04g0661900 | - | Detail |
| C1H4g07157 | 4:29,465,879-29,467,585 | + | C2H4g06604 | CX4g035185 | LOC_Os04g56654 | - | - | Detail |
| C1H4g06952 | 4:29,468,052-29,469,832 | - | C2H4g27865 | CX4g035521 | LOC_Os04g56670 | Os04g0662100 | - | Detail |
| C1H4g20842 | 4:29,492,711-29,495,836 | - | C2H4g27508 | CX4g032460 | LOC_Os04g56700 | Os04g0662600 | F3H | Detail |
| C1H4g09059 | 4:29,497,177-29,501,717 | - | C2H4g17303 | CX4g034138 | LOC_Os04g56710 | Os04g0662700 | - | Detail |
| C1H4g13098 | 4:29,503,747-29,509,876 | + | C2H4g16716 | CX4g034339 | LOC_Os04g56720 | Os04g0662800 | - | Detail |
| C1H4g29894 | 4:29,510,592-29,512,553 | - | C2H4g14267 | CX4g033445 | LOC_Os04g56730 | Os04g0662900 | - | Detail |
| C1H4g08308 | 4:29,529,386-29,535,319 | + | C2H4g26679 | CX4g032535 | LOC_Os04g56740 | Os04g0663100 | - | Detail |
| C1H4g00285 | 4:29,538,771-29,544,273 | - | C2H4g19453 | CX4g033028 | LOC_Os04g56750 | Os04g0663200 | - | Detail |
| C1H4g10605 | 4:29,546,843-29,547,097 | + | C2H4g23478 | CX4g034501 | - | - | - | Detail |
| C1H4g18316 | 4:29,547,148-29,550,525 | + | C2H4g29870 | CX4g032009 | LOC_Os04g56770 | Os04g0663500 | - | Detail |
| C1H4g08413 | 4:29,551,368-29,552,386 | - | C2H4g27682 | CX4g035961 | LOC_Os04g56780 | Os04g0663600 | WOX1, Os WUS, WUS, OsWOX1, OsWUS, TAB1, TAB1/WUS, MOC3, MOC3/OsWUS | Detail |
| C1H4g06808 | 4:29,560,529-29,567,508 | - | C2H4g25028 | CX4g034853 | LOC_Os04g56790 | Os04g0663700 | - | Detail |
| C1H4g18422 | 4:29,575,958-29,581,942 | - | C2H4g20102 | CX4g033249 | LOC_Os04g56850 | Os04g0664400 | OsARF11, OsMP | Detail |
| C1H4g28826 | 4:29,615,096-29,617,428 | - | C2H4g12473 | CX4g036377 | LOC_Os04g56920 | Os04g0664800 | - | Detail |
| C1H4g05011 | 4:29,618,216-29,620,579 | - | C2H4g26922 | CX4g036377 | LOC_Os04g56930 | Os04g0664900 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX7g046000 | 7:23,896,430-23,901,006 | - | C1H7g19401 | C2H7g24344 | LOC_Os07g48229 | Os07g0680000 | OsVSR5 | Detail |
| CX7g048603 | 7:23,903,883-23,904,359 | - | C1H7g13190 | C2H7g23531 | LOC_Os07g48244 | Os07g0680300 | - | Detail |
| CX7g047556 | 7:23,908,786-23,910,729 | - | C1H7g01118 | C2H7g24468 | LOC_Os07g48260 | Os07g0680400 | WRKY47, OsWRKY47 | Detail |
| CX7g047252 | 7:23,912,741-23,924,290 | - | C1H7g04006 | C2H7g00831 | LOC_Os07g48270 | Os07g0680500 | OsCHR739, CHR739 | Detail |
| CX7g049761 | 7:23,927,006-23,929,040 | - | C1H7g12170 | C2H7g24446 | LOC_Os07g48280 | Os07g0680600 | - | Detail |
| CX7g047922 | 7:23,934,719-23,936,596 | + | C1H7g12984 | C2H7g11793 | LOC_Os07g48290 | Os07g0680900 | OsAGC14 | Detail |
| CX7g048000 | 7:23,937,863-23,940,166 | - | C1H7g30716 | C2H7g03954 | LOC_Os07g48300 | Os07g0681000 | - | Detail |
| CX7g047134 | 7:23,940,916-23,943,232 | - | C1H7g13736 | C2H7g19663 | LOC_Os07g48310 | Os07g0681100 | - | Detail |
| CX7g048737 | 7:23,949,242-23,949,538 | - | - | - | - | - | - | Detail |
| CX7g050203 | 7:23,957,142-23,958,829 | + | C1H7g20020 | C2H7g11337 | LOC_Os07g48320 | Os07g0681200 | - | Detail |
| CX7g048614 | 7:23,964,028-23,968,292 | + | C1H7g31370 | C2H7g09291 | LOC_Os07g48330 | Os07g0681300 | CYP714B1 | Detail |
| CX7g050350 | 7:23,991,952-23,999,359 | + | C1H7g13652 | C2H7g21440 | LOC_Os07g48350 | Os07g0681500 | - | Detail |
| CX7g048418 | 7:24,000,559-24,007,151 | + | C1H7g23608 | C2H7g14830 | LOC_Os07g48360 | Os07g0681600 | OsRecQ886 | Detail |
| CX7g049603 | 7:24,009,516-24,013,623 | + | C1H7g23117 | C2H7g29810 | LOC_Os07g48370 | Os07g0681700 | - | Detail |
| CX7g047173 | 7:24,015,885-24,016,376 | + | - | - | - | - | - | Detail |
| CX7g049645 | 7:24,021,676-24,022,765 | + | C1H7g27841 | C2H7g24286 | LOC_Os07g48390 | Os07g0682000 | OsHIPP9 | Detail |
| CX7g046293 | 7:24,029,986-24,032,747 | - | C1H7g24464 | C2H7g06356 | LOC_Os07g48410 | Os07g0682400 | - | Detail |
| CX7g047348 | 7:24,037,109-24,037,276 | - | - | - | - | - | - | Detail |
| CX7g047925 | 7:24,056,295-24,056,519 | + | - | - | - | - | - | Detail |
| CX7g049823 | 7:24,057,365-24,061,044 | - | C1H7g23378 | C2H7g20348 | LOC_Os07g48420 | Os07g0682700 | - | Detail |