| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H1g02341 | 1:19,552-27,397 | + | C2H1g13015 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C1H1g23301 | 1:34,909-38,077 | + | C2H1g25732 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C1H1g05541 | 1:38,658-42,693 | + | C2H1g24136 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C1H1g18141 | 1:45,137-49,100 | + | C2H1g01770 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C1H1g06702 | 1:49,316-50,669 | + | C2H1g21686 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C1H1g15122 | 1:53,886-58,091 | + | C2H1g03140 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C1H1g26676 | 1:58,983-64,706 | + | C2H1g12741 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C1H1g29605 | 1:68,013-72,703 | + | C2H1g30020 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C1H1g15874 | 1:72,685-75,717 | - | C2H1g01369 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C1H1g31238 | 1:79,440-86,394 | + | C2H1g16597 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C1H1g30351 | 1:88,972-90,382 | + | C2H1g26722 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C1H1g07147 | 1:93,453-96,885 | + | C2H1g16862 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C1H1g23624 | 1:103,904-104,966 | + | C2H1g21224 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C1H1g19237 | 1:106,332-109,626 | + | C2H1g12981 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C1H1g02228 | 1:110,056-112,714 | + | C2H1g13148 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C1H1g19000 | 1:113,782-115,921 | + | C2H1g25133 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| C1H1g20467 | 1:116,248-118,728 | + | C2H1g01047 | CX1g001371 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| C1H1g21121 | 1:119,474-124,658 | + | C2H1g05282 | CX1g006904 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| C1H1g31375 | 1:129,470-130,340 | - | C2H1g27348 | CX1g001497 | LOC_Os01g01340 | Os01g0102900 | LIR1, Lir1 | Detail |
| C1H1g31418 | 1:131,158-133,161 | - | C2H1g25360 | CX1g000859 | LOC_Os01g01350 | Os01g0103000 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H3g02193 | 3:26,699,326-26,706,899 | + | C1H3g19794 | CX3g028424 | LOC_Os03g50980 | Os03g0719100 | SIZ2, OsSIZ2 | Detail |
| C2H3g22670 | 3:26,708,932-26,716,540 | - | C1H3g27091 | CX3g025374 | LOC_Os03g51000 | Os03g0719300 | - | Detail |
| C2H3g02088 | 3:26,720,194-26,723,023 | - | C1H3g07073 | CX3g028369 | LOC_Os03g51010 | Os03g0719400 | - | Detail |
| C2H3g19826 | 3:26,728,386-26,735,558 | - | C1H3g18727 | CX3g030509 | LOC_Os03g51020 | Os03g0719500 | - | Detail |
| C2H3g21521 | 3:26,738,385-26,746,105 | - | C1H3g17828 | CX3g025792 | LOC_Os03g51030 | Os03g0719800 | PHYA, phyA, PHYA* (phyA), PHYA*, Phya, PHY18, phy 18, OsPHYA | Detail |
| C2H3g23219 | 3:26,750,154-26,752,376 | - | C1H3g02668 | CX3g027542 | LOC_Os03g51040 | Os03g0719850 | - | Detail |
| C2H3g09005 | 3:26,753,854-26,757,585 | - | C1H3g04945 | CX3g029279 | LOC_Os03g51050 | Os03g0719900 | - | Detail |
| C2H3g27436 | 3:26,776,619-26,798,197 | + | C1H3g17570 | CX3g026462 | LOC_Os03g51080 | Os03g0720300 | - | Detail |
| C2H3g28128 | 3:26,800,176-26,801,438 | + | C1H3g14449 | CX3g027259 | LOC_Os03g51090 | Os03g0720400 | - | Detail |
| C2H3g18749 | 3:26,802,500-26,803,954 | + | C1H3g00523 | CX11g011204 | LOC_Os11g37260 | - | - | Detail |
| C2H3g30385 | 3:26,815,065-26,819,266 | + | C1H3g14449 | CX3g027259 | LOC_Os03g51090 | Os03g0720400 | - | Detail |
| C2H3g13711 | 3:26,826,622-26,828,116 | + | C1H3g17570 | CX3g026462 | LOC_Os03g51080 | Os03g0720300 | - | Detail |
| C2H3g08962 | 3:26,845,435-26,846,852 | + | C1H3g27041 | CX3g028983 | LOC_Os03g51110 | Os03g0720800 | Os2R_MYB41 | Detail |
| C2H3g28611 | 3:26,857,234-26,880,062 | + | C1H3g28337 | CX3g027802 | LOC_Os03g51140 | Os03g0721200 | - | Detail |
| C2H3g23618 | 3:26,880,115-26,882,433 | - | C1H3g18786 | CX3g029589 | LOC_Os03g51150 | Os03g0721300 | - | Detail |
| C2H3g12002 | 3:26,883,244-26,886,210 | - | C1H3g12607 | CX3g029088 | LOC_Os03g51160 | Os03g0721400 | - | Detail |
| C2H3g26307 | 3:26,890,520-26,893,306 | - | C1H3g28641 | CX3g025020 | LOC_Os03g51180 | - | - | Detail |
| C2H3g16842 | 3:26,903,282-26,903,796 | + | C1H3g29102 | CX3g026654 | LOC_Os03g51200 | Os03g0279200 | - | Detail |
| C2H3g24429 | 3:26,907,935-26,913,652 | + | C1H3g04974 | CX3g029940 | LOC_Os03g51220 | Os03g0722100 | - | Detail |
| C2H3g01976 | 3:26,917,235-26,923,450 | + | C1H3g07846 | CX3g030800 | LOC_Os03g51230 | Os03g0722400 | OsDDM1b | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002578 | 1:27,684,468-27,685,502 | - | C1H1g31440 | C2H1g01556 | LOC_Os01g53910 | Os01g0742300 | - | Detail |
| CX1g002620 | 1:27,697,072-27,697,557 | - | C1H6g04386 | C2H6g28732 | - | - | - | Detail |
| CX1g007266 | 1:27,699,682-27,703,078 | + | C1H1g30211 | C2H1g04401 | LOC_Os01g53920 | Os01g0742400 | OsASLRK | Detail |
| CX1g000337 | 1:27,703,727-27,707,420 | - | C1H1g16829 | C2H1g05690 | LOC_Os01g53930 | Os01g0742500 | OsHXK6 | Detail |
| CX1g005919 | 1:27,709,571-27,709,925 | - | C1H1g31036 | C2H1g15551 | LOC_Os01g53940 | Os01g0742766 | - | Detail |
| CX1g007218 | 1:27,725,155-27,727,266 | + | C1H1g12146 | C2H1g26459 | LOC_Os01g53980 | Os01g0743100 | - | Detail |
| CX1g003238 | 1:27,733,528-27,736,184 | - | C1H1g13979 | C2H1g30365 | LOC_Os01g53990 | Os01g0743200 | - | Detail |
| CX1g000051 | 1:27,742,704-27,742,853 | - | - | - | - | - | - | Detail |
| CX1g000573 | 1:27,743,543-27,747,659 | + | C1H1g20416 | C2H1g07295 | LOC_Os01g54010 | Os01g0743300 | - | Detail |
| CX1g001592 | 1:27,748,379-27,754,106 | - | C1H1g03969 | C2H1g18249 | LOC_Os01g54020 | Os01g0743400 | - | Detail |
| CX1g003460 | 1:27,754,348-27,758,985 | + | C1H1g00803 | C2H1g05014 | LOC_Os01g54030 | Os01g0743500 | OscytME3 | Detail |
| CX1g004169 | 1:27,760,086-27,764,194 | - | C1H1g06840 | C2H1g00803 | LOC_Os01g54040 | Os01g0743600 | - | Detail |
| CX1g001390 | 1:27,770,343-27,771,534 | + | C1H1g16391 | C2H1g15454 | LOC_Os01g54050 | Os01g0743800 | - | Detail |
| CX1g003627 | 1:27,776,522-27,783,619 | + | C1H1g28688 | C2H1g21661 | LOC_Os01g54080 | Os01g0744000 | - | Detail |
| CX1g006644 | 1:27,784,873-27,786,552 | + | C1H1g31382 | C2H1g24378 | LOC_Os01g54090 | Os01g0744200 | - | Detail |
| CX1g000737 | 1:27,788,159-27,792,628 | - | C1H1g10444 | C2H1g18426 | LOC_Os01g54100 | Os01g0744300 | - | Detail |
| CX1g000548 | 1:27,796,888-27,797,142 | - | - | - | - | - | - | Detail |
| CX1g000340 | 1:27,797,356-27,798,956 | + | C1H1g12791 | C2H1g05632 | LOC_Os06g31220 | Os01g0643800 | - | Detail |
| CX1g000671 | 1:27,804,642-27,811,187 | - | C1H1g08595 | C2H1g18422 | LOC_Os01g54119 | Os01g0744400 | - | Detail |
| CX1g004050 | 1:27,815,275-27,815,784 | - | C1H1g04241 | C2H1g03794 | LOC_Os01g54140 | Os01g0744700 | - | Detail |