| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H1g11621 | 1:28,908,449-28,912,093 | - | C2H1g27726 | CX1g002848 | LOC_Os01g56130 | Os01g0766900 | OsCSLC1 | Detail |
| C1H1g23773 | 1:28,917,622-28,922,860 | - | C2H1g25186 | CX1g006079 | LOC_Os01g56140 | Os01g0767000 | OsNMCP1 | Detail |
| C1H1g07882 | 1:28,924,508-28,928,418 | - | C2H1g12650 | CX1g002490 | LOC_Os01g56150 | Os01g0767100 | - | Detail |
| C1H1g20009 | 1:28,934,059-28,937,050 | + | C2H1g17994 | CX1g005086 | LOC_Os01g56180 | Os01g0767600 | - | Detail |
| C1H1g00590 | 1:28,937,596-28,947,938 | + | C2H1g02356 | CX1g007067 | LOC_Os01g56190 | Os01g0767700 | - | Detail |
| C1H1g02614 | 1:28,954,358-28,957,527 | + | C2H1g28755 | CX1g005068 | LOC_Os01g56200 | Os01g0767900 | - | Detail |
| C1H1g14323 | 1:28,960,257-28,969,822 | - | C2H1g23081 | CX1g000886 | LOC_Os01g45880 | Os01g0646800 | - | Detail |
| C1H1g10000 | 1:28,970,638-28,972,135 | - | C2H1g28135 | CX1g005201 | LOC_Os01g56210 | Os01g0768100 | - | Detail |
| C1H1g17993 | 1:28,973,342-28,979,604 | - | C2H1g30374 | CX1g001137 | LOC_Os01g56230 | Os01g0768200 | - | Detail |
| C1H1g11693 | 1:28,981,958-28,983,986 | - | C2H1g26550 | CX1g002315 | LOC_Os01g56235 | Os01g0768300 | - | Detail |
| C1H1g01409 | 1:28,985,770-28,986,138 | + | C2H1g30140 | CX1g002605 | LOC_Os01g56240 | Os01g0768333 | OsSAUR2 | Detail |
| C1H1g26530 | 1:28,994,882-29,003,824 | + | C2H1g24802 | CX1g000267 | LOC_Os01g56290 | Os01g0768700 | - | Detail |
| C1H1g30094 | 1:29,018,079-29,024,756 | + | C2H1g11170 | CX1g001998 | LOC_Os01g56300 | Os01g0769000 | - | Detail |
| C1H1g21992 | 1:29,025,536-29,028,390 | + | C2H1g06053 | CX1g000941 | LOC_Os01g56310 | Os05g0511500 | - | Detail |
| C1H1g21169 | 1:29,039,506-29,045,221 | + | C2H1g08866 | CX1g000768 | LOC_Os01g56320 | Os01g0769200 | - | Detail |
| C1H1g11804 | 1:29,050,520-29,053,213 | + | C2H1g11294 | CX1g006832 | LOC_Os01g56330 | Os01g0769700 | - | Detail |
| C1H1g24029 | 1:29,055,074-29,061,484 | + | C2H1g27214 | CX1g006851 | LOC_Os01g56350 | Os01g0769900 | TCM1 | Detail |
| C1H1g10932 | 1:29,060,139-29,064,004 | - | C2H1g25114 | CX1g006734 | LOC_Os01g56360 | Os01g0770000 | - | Detail |
| C1H1g12311 | 1:29,066,256-29,072,055 | - | C2H1g18480 | CX1g006846 | LOC_Os01g56360 | Os01g0770000 | - | Detail |
| C1H1g07110 | 1:29,080,501-29,082,096 | - | C2H10g16117 | CX1g000584 | LOC_Os01g56380 | Os01g0770200 | TYDC, TyDC, OsTyDC, OsTYDC, TDC | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g000533 | 1:27,553,317-27,556,874 | + | C1H1g10504 | C2H1g22385 | LOC_Os01g53670 | Os01g0738600 | - | Detail |
| CX1g000235 | 1:27,563,201-27,568,179 | - | C1H1g24320 | C2H1g29572 | LOC_Os01g53680 | Os01g0738800 | - | Detail |
| CX1g004470 | 1:27,570,817-27,576,084 | - | C1H1g12855 | C2H1g23624 | LOC_Os01g53700 | Os01g0739000 | - | Detail |
| CX1g005768 | 1:27,586,118-27,589,238 | + | C1H1g24492 | C2H1g10920 | LOC_Os01g53710 | Os01g0739200 | - | Detail |
| CX1g007225 | 1:27,590,707-27,590,943 | + | - | - | LOC_Os01g54280 | Os01g0930300 | - | Detail |
| CX1g005163 | 1:27,592,274-27,598,636 | + | C1H1g03337 | C2H1g15871 | LOC_Os01g53720 | Os01g0739400 | - | Detail |
| CX1g004558 | 1:27,599,237-27,599,863 | - | C1H1g05863 | C2H1g19412 | LOC_Os01g53730 | Os01g0739500 | - | Detail |
| CX1g002993 | 1:27,612,813-27,615,630 | + | C1H1g02213 | C2H1g01037 | LOC_Os01g53750 | Os01g0739700 | - | Detail |
| CX1g004793 | 1:27,617,593-27,617,928 | - | - | - | LOC_Os01g53770 | Os01g0740000 | - | Detail |
| CX1g004055 | 1:27,622,689-27,626,788 | + | C1H1g15341 | C2H1g15894 | LOC_Os01g53790 | Os01g0740400 | - | Detail |
| CX1g000355 | 1:27,628,819-27,633,127 | - | C1H1g11923 | C2H1g04268 | LOC_Os01g53800 | Os01g0740500 | - | Detail |
| CX1g002299 | 1:27,635,302-27,639,129 | - | C1H1g10172 | C2H1g07977 | LOC_Os01g53810 | Os01g0740600 | - | Detail |
| CX1g002753 | 1:27,642,971-27,647,740 | - | C1H1g11507 | C2H1g07420 | LOC_Os01g53840 | Os01g0741200 | - | Detail |
| CX1g007200 | 1:27,661,664-27,661,837 | - | - | - | - | Os02g0188201 | - | Detail |
| CX1g002728 | 1:27,662,481-27,662,741 | - | - | - | - | - | - | Detail |
| CX1g006967 | 1:27,663,737-27,665,805 | + | C1H1g07113 | C2H1g06484 | LOC_Os01g53880 | Os01g0741900 | IAA6, OsIAA6 | Detail |
| CX1g004930 | 1:27,671,685-27,671,834 | + | - | - | LOC_Os01g57956 | - | - | Detail |
| CX1g000527 | 1:27,673,267-27,674,304 | - | - | - | LOC_Os01g53890 | Os01g0742000 | - | Detail |
| CX1g004012 | 1:27,674,819-27,675,085 | + | - | - | - | Os01g0742100 | - | Detail |
| CX1g004845 | 1:27,680,501-27,683,775 | + | C1H1g17968 | C2H1g24480 | LOC_Os01g53900 | Os01g0742200 | - | Detail |