| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H5g20589 | 5:20,905,867-20,906,226 | - | C2H5g19371 | CX5g039772 | - | Os05g0516100 | - | Detail |
| C1H5g26916 | 5:20,910,102-20,911,889 | + | C2H5g04233 | CX5g039979 | LOC_Os05g44020 | Os05g0516300 | - | Detail |
| C1H5g24467 | 5:20,917,898-20,918,944 | - | C2H5g15773 | CX5g039876 | - | Os05g0516475 | - | Detail |
| C1H5g15470 | 5:20,919,374-20,922,205 | + | C2H5g13797 | CX5g038417 | LOC_Os05g44030 | Os05g0516400 | - | Detail |
| C1H5g19283 | 5:20,922,718-20,923,179 | + | C2H5g13797 | CX5g038417 | LOC_Os05g44030 | Os05g0516400 | - | Detail |
| C1H5g14981 | 5:20,925,289-20,927,980 | + | C2H5g04641 | CX5g039493 | LOC_Os05g44050 | Os05g0516600 | OsRab7, OsRab7B3 | Detail |
| C1H5g10610 | 5:20,929,789-20,930,316 | + | C2H5g05743 | CX5g041146 | LOC_Os05g44060 | Os05g0516700 | - | Detail |
| C1H5g20151 | 5:20,931,064-20,931,702 | - | C2H5g24588 | CX5g039048 | LOC_Os05g44070 | Os05g0516800 | - | Detail |
| C1H5g21266 | 5:20,940,354-20,940,614 | - | C2H5g24588 | CX5g039048 | LOC_Os05g44070 | Os05g0516800 | - | Detail |
| C1H5g05035 | 5:20,942,661-20,948,548 | + | C2H5g20039 | CX5g039615 | LOC_Os05g44080 | Os05g0516900 | OsMac3 | Detail |
| C1H5g21400 | 5:20,949,458-20,950,402 | - | C2H5g04869 | CX5g038718 | LOC_Os05g44090 | Os05g0517100 | - | Detail |
| C1H5g00428 | 5:20,956,119-20,960,926 | + | C2H5g18358 | CX5g040204 | LOC_Os05g44100 | Os05g0517200 | - | Detail |
| C1H5g00439 | 5:20,964,090-20,965,132 | + | C2H5g21345 | CX5g037887 | LOC_Os05g44120 | Os05g0517400 | - | Detail |
| C1H5g15240 | 5:20,966,912-20,971,099 | - | C2H5g27310 | CX5g040072 | LOC_Os05g44130 | Os05g0517500 | - | Detail |
| C1H5g27527 | 5:20,972,270-20,975,554 | - | C2H5g03251 | CX5g039695 | LOC_Os05g44140 | Os05g0517600 | Hb5 | Detail |
| C1H5g21769 | 5:20,976,669-20,978,873 | + | C2H5g27370 | CX5g040040 | LOC_Os05g44160 | Os05g0517800 | - | Detail |
| C1H5g08677 | 5:20,979,685-20,980,923 | + | C2H5g00950 | CX5g037606 | LOC_Os05g44170 | Os05g0517900 | - | Detail |
| C1H5g28867 | 5:20,982,079-20,982,889 | - | C2H5g12138 | CX5g039831 | LOC_Os05g44180 | Os05g0518000 | OsFTL10 | Detail |
| C1H5g21350 | 5:20,992,158-20,996,646 | + | C2H5g05606 | CX5g040142 | LOC_Os05g44190 | Os05g0518200 | - | Detail |
| C1H5g09247 | 5:20,998,142-21,000,116 | - | C2H5g18484 | CX5g037767 | LOC_Os05g44200 | Os05g0518300 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g000021 | 1:27,402,155-27,403,630 | + | C1H1g17596 | C2H1g27577 | LOC_Os01g53370 | Os01g0735300 | - | Detail |
| CX1g002631 | 1:27,417,575-27,418,975 | + | C1H1g17596 | C2H1g27577 | LOC_Os01g53390 | Os01g0735300 | - | Detail |
| CX1g004334 | 1:27,423,749-27,425,179 | - | C1H1g12410 | C2H1g28000 | LOC_Os01g53420 | Os01g0735900 | - | Detail |
| CX1g005230 | 1:27,430,274-27,431,698 | - | C1H1g11199 | C2H1g03039 | LOC_Os01g53430 | Os01g0736100 | - | Detail |
| CX1g005942 | 1:27,440,937-27,444,278 | + | C1H1g04228 | C2H1g23129 | LOC_Os01g53450 | Os01g0736400 | - | Detail |
| CX1g003434 | 1:27,445,844-27,446,596 | + | C1H1g11257 | C2H1g09664 | LOC_Os01g53470 | Os01g0736500 | - | Detail |
| CX1g006022 | 1:27,452,926-27,453,858 | - | - | - | - | - | - | Detail |
| CX1g003962 | 1:27,461,294-27,462,860 | + | C1H1g18188 | C2H1g22559 | LOC_Os01g53520 | Os01g0736900 | - | Detail |
| CX1g006259 | 1:27,467,438-27,468,160 | - | - | - | LOC_Os01g53550 | Os01g0737100 | - | Detail |
| CX1g006682 | 1:27,473,968-27,480,332 | + | C1H1g17501 | C2H1g29848 | LOC_Os01g53560 | Os01g0737300 | - | Detail |
| CX1g007234 | 1:27,485,418-27,487,658 | + | C1H1g26053 | C2H1g23141 | LOC_Os01g53570 | Os01g0737500 | - | Detail |
| CX1g000486 | 1:27,489,647-27,490,273 | + | C1H1g28789 | C2H1g28481 | LOC_Os01g53580 | Os01g0737600 | - | Detail |
| CX1g001301 | 1:27,494,096-27,494,722 | + | C1H1g28789 | C2H1g28481 | LOC_Os01g53590 | Os01g0737700 | - | Detail |
| CX1g004371 | 1:27,496,671-27,500,763 | - | C1H1g20246 | C2H1g06822 | LOC_Os01g53600 | Os01g0737800 | OsERA1, OsERA1.1, OsPFT-β | Detail |
| CX1g003960 | 1:27,500,987-27,503,857 | + | C1H1g10368 | C2H1g22933 | LOC_Os01g53610 | Os01g0737900 | DYW3 | Detail |
| CX1g007226 | 1:27,506,101-27,506,502 | + | C1H1g29380 | C2H1g30197 | LOC_Os01g53620 | Os01g0738000 | - | Detail |
| CX1g002866 | 1:27,508,969-27,516,304 | - | C1H1g12561 | C2H1g26273 | LOC_Os01g53630 | Os01g0738100 | - | Detail |
| CX1g000101 | 1:27,534,125-27,540,340 | + | C1H1g20235 | C2H1g06044 | LOC_Os01g53640 | Os01g0738300 | - | Detail |
| CX1g003656 | 1:27,541,916-27,542,599 | + | - | - | LOC_Os01g53650 | Os01g0738400 | OsC3H10 | Detail |
| CX1g001943 | 1:27,549,744-27,552,321 | + | C1H1g20301 | C2H1g19036 | LOC_Os01g53660 | Os01g0738500 | - | Detail |