| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H5g04550 | 5:2,409,855-2,417,940 | - | C2H5g08617 | CX5g040844 | LOC_Os05g05580 | Os05g0148500 | - | Detail |
| C1H5g16478 | 5:2,419,600-2,425,618 | - | C2H5g16069 | CX5g036905 | LOC_Os05g05590 | Os05g0148600 | OsNHX3 | Detail |
| C1H5g12042 | 5:2,428,676-2,433,733 | + | C2H5g09761 | CX5g038573 | LOC_Os05g05600 | Os05g0148700 | - | Detail |
| C1H5g16614 | 5:2,435,391-2,436,158 | + | - | CX5g037439 | LOC_Os05g05610 | Os05g0148800 | - | Detail |
| C1H5g23031 | 5:2,439,035-2,440,054 | + | C2H5g00872 | CX5g038518 | LOC_Os05g05620 | Os05g0148900 | - | Detail |
| C1H5g21277 | 5:2,440,564-2,441,112 | + | - | CX5g038748 | LOC_Os05g05640 | Os05g0149000 | OsPMEI21 | Detail |
| C1H5g09882 | 5:2,447,466-2,450,177 | + | C2H5g11195 | CX5g038796 | LOC_Os05g03110 | Os05g0149200 | - | Detail |
| C1H5g20173 | 5:2,452,138-2,455,337 | + | C2H5g11195 | CX5g038796 | LOC_Os05g05660 | - | - | Detail |
| C1H5g08164 | 5:2,456,692-2,457,893 | - | C2H5g03497 | CX5g040850 | LOC_Os05g05680 | Os05g0149400 | ACO5, OsACO5 | Detail |
| C1H5g12513 | 5:2,468,619-2,471,238 | + | C2H5g16494 | CX5g040805 | LOC_Os05g05690 | Os05g0149500 | - | Detail |
| C1H5g08311 | 5:2,472,802-2,479,423 | - | C2H5g25711 | CX5g038928 | LOC_Os05g05700 | Os05g0149600 | OsCUL1-2 | Detail |
| C1H5g22304 | 5:2,489,236-2,495,106 | + | C2H5g15844 | CX5g038404 | LOC_Os05g05710 | Os05g0149800 | - | Detail |
| C1H5g26443 | 5:2,496,088-2,501,842 | + | C2H5g18610 | CX5g036871 | LOC_Os05g05720 | Os05g0149900 | - | Detail |
| C1H5g12097 | 5:2,505,390-2,506,200 | - | C2H5g00389 | CX5g037725 | - | - | - | Detail |
| C1H5g19233 | 5:2,508,050-2,510,894 | - | C2H5g17068 | CX5g039274 | LOC_Os05g05740 | Os05g0150000 | HTH5, PLPHP | Detail |
| C1H5g21935 | 5:2,514,334-2,524,289 | + | C2H5g22435 | CX5g036676 | LOC_Os05g05780 | Os05g0150300 | OsCHR727, CHR727 | Detail |
| C1H5g05513 | 5:2,524,698-2,529,274 | - | C2H5g24081 | CX5g040936 | LOC_Os05g05790 | Os05g0150400 | OsDRB3 | Detail |
| C1H5g15222 | 5:2,532,326-2,538,743 | - | C2H5g02158 | CX5g037178 | LOC_Os05g05800 | Os05g0150500 | TIR1, OsTIR1 | Detail |
| C1H5g02062 | 5:2,546,962-2,553,861 | - | C2H5g00353 | CX5g037551 | LOC_Os05g05810 | Os05g0150600 | OsRecQsim | Detail |
| C1H5g05063 | 5:2,567,192-2,567,847 | + | C2H5g03107 | CX5g038863 | - | - | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g000021 | 1:27,402,155-27,403,630 | + | C1H1g17596 | C2H1g27577 | LOC_Os01g53370 | Os01g0735300 | - | Detail |
| CX1g002631 | 1:27,417,575-27,418,975 | + | C1H1g17596 | C2H1g27577 | LOC_Os01g53390 | Os01g0735300 | - | Detail |
| CX1g004334 | 1:27,423,749-27,425,179 | - | C1H1g12410 | C2H1g28000 | LOC_Os01g53420 | Os01g0735900 | - | Detail |
| CX1g005230 | 1:27,430,274-27,431,698 | - | C1H1g11199 | C2H1g03039 | LOC_Os01g53430 | Os01g0736100 | - | Detail |
| CX1g005942 | 1:27,440,937-27,444,278 | + | C1H1g04228 | C2H1g23129 | LOC_Os01g53450 | Os01g0736400 | - | Detail |
| CX1g003434 | 1:27,445,844-27,446,596 | + | C1H1g11257 | C2H1g09664 | LOC_Os01g53470 | Os01g0736500 | - | Detail |
| CX1g006022 | 1:27,452,926-27,453,858 | - | - | - | - | - | - | Detail |
| CX1g003962 | 1:27,461,294-27,462,860 | + | C1H1g18188 | C2H1g22559 | LOC_Os01g53520 | Os01g0736900 | - | Detail |
| CX1g006259 | 1:27,467,438-27,468,160 | - | - | - | LOC_Os01g53550 | Os01g0737100 | - | Detail |
| CX1g006682 | 1:27,473,968-27,480,332 | + | C1H1g17501 | C2H1g29848 | LOC_Os01g53560 | Os01g0737300 | - | Detail |
| CX1g007234 | 1:27,485,418-27,487,658 | + | C1H1g26053 | C2H1g23141 | LOC_Os01g53570 | Os01g0737500 | - | Detail |
| CX1g000486 | 1:27,489,647-27,490,273 | + | C1H1g28789 | C2H1g28481 | LOC_Os01g53580 | Os01g0737600 | - | Detail |
| CX1g001301 | 1:27,494,096-27,494,722 | + | C1H1g28789 | C2H1g28481 | LOC_Os01g53590 | Os01g0737700 | - | Detail |
| CX1g004371 | 1:27,496,671-27,500,763 | - | C1H1g20246 | C2H1g06822 | LOC_Os01g53600 | Os01g0737800 | OsERA1, OsERA1.1, OsPFT-β | Detail |
| CX1g003960 | 1:27,500,987-27,503,857 | + | C1H1g10368 | C2H1g22933 | LOC_Os01g53610 | Os01g0737900 | DYW3 | Detail |
| CX1g007226 | 1:27,506,101-27,506,502 | + | C1H1g29380 | C2H1g30197 | LOC_Os01g53620 | Os01g0738000 | - | Detail |
| CX1g002866 | 1:27,508,969-27,516,304 | - | C1H1g12561 | C2H1g26273 | LOC_Os01g53630 | Os01g0738100 | - | Detail |
| CX1g000101 | 1:27,534,125-27,540,340 | + | C1H1g20235 | C2H1g06044 | LOC_Os01g53640 | Os01g0738300 | - | Detail |
| CX1g003656 | 1:27,541,916-27,542,599 | + | - | - | LOC_Os01g53650 | Os01g0738400 | OsC3H10 | Detail |
| CX1g001943 | 1:27,549,744-27,552,321 | + | C1H1g20301 | C2H1g19036 | LOC_Os01g53660 | Os01g0738500 | - | Detail |