| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H3g21044 | 3:28,407,285-28,411,963 | + | C2H3g05635 | CX3g026362 | LOC_Os03g52840 | Os03g0738400 | - | Detail |
| C1H3g07947 | 3:28,426,568-28,430,229 | + | C2H3g05845 | CX3g025013 | LOC_Os03g52860 | Os03g0738600 | LOX-L2, OsLOX-L2, LOX1.1, LOX L-2, OsLOX2 | Detail |
| C1H3g24267 | 3:28,436,712-28,439,660 | + | C2H3g02923 | CX3g030893 | LOC_Os03g52880 | Os03g0738900 | - | Detail |
| C1H3g14490 | 3:28,448,580-28,450,347 | + | C2H3g01404 | CX3g028113 | LOC_Os03g52910 | Os03g0739700 | - | Detail |
| C1H3g22532 | 3:28,479,943-28,483,987 | + | C2H3g15580 | CX3g026120 | LOC_Os03g52970 | Os03g0740600 | - | Detail |
| C1H3g30167 | 3:28,484,903-28,489,513 | + | C2H3g17064 | CX3g027471 | LOC_Os03g52980 | Os03g0740700 | - | Detail |
| C1H3g01871 | 3:28,493,632-28,496,160 | + | C2H3g00686 | CX3g027476 | LOC_Os03g53000 | Os03g0740800 | - | Detail |
| C1H3g26768 | 3:28,496,541-28,500,749 | + | C2H3g21662 | - | - | - | - | Detail |
| C1H3g08757 | 3:28,507,086-28,509,286 | + | C2H3g06591 | CX3g029988 | LOC_Os03g53020 | Os03g0741100 | OsbHLH148 | Detail |
| C1H3g07900 | 3:28,523,241-28,526,391 | + | C2H3g29971 | CX3g029674 | LOC_Os03g53050 | Os03g0741400 | - | Detail |
| C1H3g12278 | 3:28,532,123-28,533,453 | - | C2H3g23101 | - | - | Os03g0741525 | - | Detail |
| C1H3g27808 | 3:28,544,091-28,544,348 | + | C2H3g26390 | CX3g026540 | - | - | - | Detail |
| C1H3g17107 | 3:28,546,837-28,551,431 | - | C2H3g15523 | CX3g028122 | LOC_Os03g53080 | Os03g0741700 | - | Detail |
| C1H3g25937 | 3:28,551,328-28,551,737 | + | C2H3g20852 | - | - | - | - | Detail |
| C1H3g11146 | 3:28,559,552-28,560,637 | + | C2H3g21579 | CX3g030571 | LOC_Os03g53100 | Os03g0742300 | - | Detail |
| C1H3g09898 | 3:28,561,931-28,566,717 | - | C2H3g18927 | CX3g025479 | LOC_Os03g53110 | Os03g0742400 | - | Detail |
| C1H3g03745 | 3:28,574,781-28,575,712 | + | C2H3g26757 | CX3g029167 | - | - | - | Detail |
| C1H3g23529 | 3:28,576,537-28,582,153 | + | C2H3g15149 | CX3g030577 | LOC_Os03g53140 | Os03g0742800 | - | Detail |
| C1H3g12201 | 3:28,581,074-28,583,176 | - | C2H3g27219 | CX3g026971 | LOC_Os03g53150 | Os03g0742900 | - | Detail |
| C1H3g22035 | 3:28,584,836-28,585,219 | + | C2H3g13028 | - | - | - | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX7g048021 | 7:18,793,500-18,795,541 | + | C1H7g30147 | C2H7g06512 | LOC_Os07g38240 | Os07g0569700 | SAP16, OsSAP16 | Detail |
| CX7g049938 | 7:18,798,686-18,800,266 | - | - | - | - | - | - | Detail |
| CX7g049573 | 7:18,806,218-18,822,771 | - | C1H7g19531 | C2H7g28954 | LOC_Os07g38260 | Os07g0570100 | - | Detail |
| CX7g050239 | 7:18,824,095-18,840,860 | - | C1H7g19531 | C2H7g28954 | LOC_Os07g38270 | Os07g0570300 | - | Detail |
| CX7g046084 | 7:18,842,332-18,842,493 | + | - | - | - | - | - | Detail |
| CX7g048716 | 7:18,846,628-18,847,005 | - | C1H7g01635 | C2H7g26626 | LOC_Os07g38290 | Os07g0570550 | - | Detail |
| CX7g048383 | 7:18,853,276-18,857,501 | + | C1H7g14068 | C2H7g25377 | LOC_Os07g38300 | Os07g0570700 | - | Detail |
| CX7g050410 | 7:18,866,385-18,870,405 | - | C1H7g21795 | C2H7g26538 | LOC_Os07g38310 | Os07g0571000 | - | Detail |
| CX7g049919 | 7:18,873,092-18,879,119 | - | C1H7g04151 | C2H7g14088 | LOC_Os07g38360 | Os07g0571100 | - | Detail |
| CX7g049193 | 7:18,882,603-18,882,890 | - | - | - | LOC_Os07g38370 | Os07g0571300 | - | Detail |
| CX7g050054 | 7:18,901,684-18,905,932 | - | C1H7g07708 | C2H7g26302 | LOC_Os07g38380 | Os07g0571500 | - | Detail |
| CX7g050264 | 7:18,908,112-18,910,265 | - | C1H7g01313 | C2H7g26689 | LOC_Os07g38390 | Os07g0571600 | - | Detail |
| CX7g048036 | 7:18,912,823-18,916,167 | - | C1H7g26230 | C2H7g00268 | LOC_Os07g38400 | Os07g0571700 | - | Detail |
| CX7g047043 | 7:18,917,706-18,918,736 | + | C1H7g06577 | C2H7g06431 | LOC_Os07g38410 | Os07g0571800 | - | Detail |
| CX7g048183 | 7:18,919,220-18,921,780 | - | C1H7g06514 | C2H7g10161 | LOC_Os07g38420 | Os07g0571900 | - | Detail |
| CX7g048711 | 7:18,922,903-18,925,096 | + | C1H7g05779 | C2H7g29627 | LOC_Os07g38430 | Os07g0572000 | OsWDR5b | Detail |
| CX7g046812 | 7:18,926,882-18,931,008 | + | C1H7g22431 | C2H7g24214 | - | Os07g0572100 | - | Detail |
| CX7g048703 | 7:18,939,190-18,939,969 | + | C1H7g08436 | - | LOC_Os07g38460 | Os07g0572300 | - | Detail |
| CX7g048882 | 7:18,942,574-18,942,921 | + | C1H7g22876 | C2H7g08684 | LOC_Os07g38470 | Os07g0572400 | - | Detail |
| CX7g046468 | 7:18,944,403-18,945,927 | + | C1H7g14715 | C2H7g14265 | LOC_Os07g38480 | Os07g0572500 | - | Detail |