| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H1g02341 | 1:19,552-27,397 | + | C2H1g13015 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C1H1g23301 | 1:34,909-38,077 | + | C2H1g25732 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C1H1g05541 | 1:38,658-42,693 | + | C2H1g24136 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C1H1g18141 | 1:45,137-49,100 | + | C2H1g01770 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C1H1g06702 | 1:49,316-50,669 | + | C2H1g21686 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C1H1g15122 | 1:53,886-58,091 | + | C2H1g03140 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C1H1g26676 | 1:58,983-64,706 | + | C2H1g12741 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C1H1g29605 | 1:68,013-72,703 | + | C2H1g30020 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C1H1g15874 | 1:72,685-75,717 | - | C2H1g01369 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C1H1g31238 | 1:79,440-86,394 | + | C2H1g16597 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C1H1g30351 | 1:88,972-90,382 | + | C2H1g26722 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C1H1g07147 | 1:93,453-96,885 | + | C2H1g16862 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C1H1g23624 | 1:103,904-104,966 | + | C2H1g21224 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C1H1g19237 | 1:106,332-109,626 | + | C2H1g12981 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C1H1g02228 | 1:110,056-112,714 | + | C2H1g13148 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C1H1g19000 | 1:113,782-115,921 | + | C2H1g25133 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| C1H1g20467 | 1:116,248-118,728 | + | C2H1g01047 | CX1g001371 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| C1H1g21121 | 1:119,474-124,658 | + | C2H1g05282 | CX1g006904 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| C1H1g31375 | 1:129,470-130,340 | - | C2H1g27348 | CX1g001497 | LOC_Os01g01340 | Os01g0102900 | LIR1, Lir1 | Detail |
| C1H1g31418 | 1:131,158-133,161 | - | C2H1g25360 | CX1g000859 | LOC_Os01g01350 | Os01g0103000 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H4g11001 | 4:14,164,081-14,168,879 | - | C1H4g08997 | CX4g034310 | LOC_Os04g28210 | Os04g0349700 | - | Detail |
| C2H4g17175 | 4:14,180,175-14,182,661 | + | C1H4g05397 | CX4g034236 | LOC_Os04g28234 | Os04g0350000 | - | Detail |
| C2H4g23045 | 4:14,195,253-14,202,545 | + | C1H4g22441 | CX4g035357 | LOC_Os04g28260 | Os04g0350300 | - | Detail |
| C2H4g11650 | 4:14,222,224-14,225,155 | - | C1H4g22936 | CX4g032228 | LOC_Os04g28280 | Os04g0350700 | AN1, An-1, OsbHLH093, RAE1, An-1/RAE1, RAE1/An-1, Awn4-2 | Detail |
| C2H4g04479 | 4:14,248,339-14,250,711 | + | C1H4g25714 | CX4g035158 | LOC_Os04g28300 | Os04g0351333 | - | Detail |
| C2H4g21363 | 4:14,289,764-14,291,863 | - | - | CX4g032447 | - | Os04g0351933 | - | Detail |
| C2H4g20483 | 4:14,308,307-14,311,786 | - | C1H4g17106 | CX4g035796 | LOC_Os04g28420 | Os04g0352400 | OsFKBP65, OsFKBP62b | Detail |
| C2H4g20527 | 4:14,314,841-14,317,346 | - | C1H4g12183 | CX4g034006 | - | Os04g0514500 | - | Detail |
| C2H4g10375 | 4:14,317,655-14,317,945 | - | C1H12g08774 | CX4g034006 | LOC_Os12g33165 | Os12g0516350 | - | Detail |
| C2H4g19395 | 4:14,318,657-14,335,073 | - | C1H4g30599 | CX4g032773 | LOC_Os04g28460 | Os04g0353000 | - | Detail |
| C2H4g27416 | 4:14,346,233-14,353,053 | + | C1H4g12388 | CX4g035108 | LOC_Os04g28520 | Os04g0353600 | OsFAR5 | Detail |
| C2H4g00657 | 4:14,371,911-14,373,770 | + | C1H4g08909 | CX4g035108 | LOC_Os04g28620 | Os04g0353600 | OsFAR5 | Detail |
| C2H4g13961 | 4:14,391,075-14,395,383 | + | C1H4g20993 | CX4g035108 | LOC_Os04g28680 | Os04g0355500 | - | Detail |
| C2H4g02790 | 4:14,404,858-14,405,935 | + | C1H4g20993 | CX4g035108 | LOC_Os04g28520 | Os04g0353600 | OsFAR5 | Detail |
| C2H4g06544 | 4:14,456,359-14,463,117 | - | C1H4g04495 | CX4g031953 | LOC_Os04g28820 | Os04g0357300 | - | Detail |
| C2H4g26367 | 4:14,470,976-14,471,554 | + | - | - | - | - | - | Detail |
| C2H4g22686 | 4:14,483,131-14,484,729 | + | C1H4g03600 | CX4g035284 | LOC_Os04g28860 | - | - | Detail |
| C2H4g15541 | 4:14,485,331-14,485,621 | + | C1H4g03600 | CX4g035284 | LOC_Os04g28860 | - | - | Detail |
| C2H4g24652 | 4:14,487,401-14,490,996 | + | C1H4g03600 | - | LOC_Os04g28860 | - | - | Detail |
| C2H4g09999 | 4:14,491,622-14,493,859 | + | C1H4g03600 | CX4g031772 | LOC_Os04g28870 | Os04g0358000 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002698 | 1:27,269,201-27,272,331 | - | C1H1g05462 | C2H1g25202 | LOC_Os01g53130 | Os01g0731800 | - | Detail |
| CX1g002007 | 1:27,282,518-27,282,730 | - | C1H1g13195 | C2H1g12212 | - | Os01g0732000 | - | Detail |
| CX1g005912 | 1:27,283,043-27,283,282 | + | C1H1g19403 | C2H1g12385 | LOC_Os01g53140 | Os01g0750800 | - | Detail |
| CX1g006701 | 1:27,286,500-27,290,329 | + | C1H1g18233 | C2H1g09330 | LOC_Os01g53150 | Os01g0732200 | - | Detail |
| CX1g004925 | 1:27,292,204-27,293,175 | + | C1H1g04807 | - | LOC_Os01g53160 | Os01g0732300 | OFP3 | Detail |
| CX1g000356 | 1:27,308,093-27,310,743 | + | C1H1g17097 | C2H1g23680 | LOC_Os01g53200 | Os01g0732700 | YUCCA3, OsYUCCA3 | Detail |
| CX1g000815 | 1:27,311,868-27,312,086 | + | - | - | - | - | - | Detail |
| CX1g002859 | 1:27,314,099-27,314,437 | - | C1H1g06233 | C2H1g25806 | - | - | - | Detail |
| CX1g003483 | 1:27,320,938-27,321,788 | + | C1H1g02415 | C2H1g04447 | LOC_Os01g53220 | Os01g0733200 | OsHsfC1b | Detail |
| CX1g006706 | 1:27,329,445-27,329,828 | - | C1H1g21238 | C2H1g19099 | LOC_Os05g03030 | Os05g0121500 | - | Detail |
| CX1g006230 | 1:27,331,853-27,332,020 | + | - | - | - | - | - | Detail |
| CX1g000184 | 1:27,334,254-27,336,282 | + | C1H1g25026 | C2H1g23186 | LOC_Os01g53240 | Os01g0733500 | - | Detail |
| CX1g001304 | 1:27,338,053-27,342,970 | - | C1H1g17481 | C2H1g16933 | LOC_Os01g53250 | Os01g0733600 | - | Detail |
| CX1g001858 | 1:27,349,798-27,353,170 | + | C1H1g18098 | C2H1g28398 | LOC_Os01g53260 | Os01g0734000 | OsWRKY23 | Detail |
| CX1g000236 | 1:27,356,417-27,356,632 | - | - | - | - | - | - | Detail |
| CX1g006620 | 1:27,357,111-27,357,661 | + | C1H1g05786 | C2H1g03923 | LOC_Os01g53280 | Os01g0734100 | - | Detail |
| CX1g004251 | 1:27,367,830-27,375,290 | + | C1H1g09802 | C2H1g19534 | LOC_Os01g53294 | Os01g0734200 | OsRbohA, OsNOX2 | Detail |
| CX1g001402 | 1:27,378,313-27,378,949 | - | C1H1g03864 | - | - | Os09g0391800 | - | Detail |
| CX1g003307 | 1:27,382,401-27,383,846 | + | C1H1g16727 | C2H1g09241 | LOC_Os01g53330 | Os01g0734600 | OsUGT1 | Detail |
| CX1g003337 | 1:27,390,167-27,391,603 | + | C1H1g16727 | C2H1g09241 | LOC_Os01g53350 | Os01g0734800 | - | Detail |