| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H1g02341 | 1:19,552-27,397 | + | C2H1g13015 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C1H1g23301 | 1:34,909-38,077 | + | C2H1g25732 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C1H1g05541 | 1:38,658-42,693 | + | C2H1g24136 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C1H1g18141 | 1:45,137-49,100 | + | C2H1g01770 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C1H1g06702 | 1:49,316-50,669 | + | C2H1g21686 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C1H1g15122 | 1:53,886-58,091 | + | C2H1g03140 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C1H1g26676 | 1:58,983-64,706 | + | C2H1g12741 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C1H1g29605 | 1:68,013-72,703 | + | C2H1g30020 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C1H1g15874 | 1:72,685-75,717 | - | C2H1g01369 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C1H1g31238 | 1:79,440-86,394 | + | C2H1g16597 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C1H1g30351 | 1:88,972-90,382 | + | C2H1g26722 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C1H1g07147 | 1:93,453-96,885 | + | C2H1g16862 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C1H1g23624 | 1:103,904-104,966 | + | C2H1g21224 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C1H1g19237 | 1:106,332-109,626 | + | C2H1g12981 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C1H1g02228 | 1:110,056-112,714 | + | C2H1g13148 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C1H1g19000 | 1:113,782-115,921 | + | C2H1g25133 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| C1H1g20467 | 1:116,248-118,728 | + | C2H1g01047 | CX1g001371 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| C1H1g21121 | 1:119,474-124,658 | + | C2H1g05282 | CX1g006904 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| C1H1g31375 | 1:129,470-130,340 | - | C2H1g27348 | CX1g001497 | LOC_Os01g01340 | Os01g0102900 | LIR1, Lir1 | Detail |
| C1H1g31418 | 1:131,158-133,161 | - | C2H1g25360 | CX1g000859 | LOC_Os01g01350 | Os01g0103000 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H3g05410 | 3:2,813,014-2,821,309 | + | C1H3g11682 | CX3g027922 | LOC_Os03g06510 | Os03g0161100 | - | Detail |
| C2H3g11481 | 3:2,821,809-2,827,231 | - | C1H3g12948 | CX3g029615 | LOC_Os03g06520 | Os03g0161200 | - | Detail |
| C2H3g04338 | 3:2,839,593-2,841,892 | + | C1H3g19950 | CX3g031150 | LOC_Os03g06570 | Os03g0161400 | - | Detail |
| C2H3g04897 | 3:2,849,650-2,852,046 | + | C1H3g16884 | CX3g029485 | LOC_Os03g06580 | Os03g0161500 | - | Detail |
| C2H3g20671 | 3:2,857,405-2,857,866 | - | C1H3g31680 | CX3g029738 | LOC_Os03g06610 | Os03g0161600 | OsEPFL6 | Detail |
| C2H3g16543 | 3:2,873,484-2,875,711 | + | C1H3g19723 | CX3g029835 | LOC_Os03g06620 | Os03g0161800 | - | Detail |
| C2H3g18983 | 3:2,877,424-2,879,447 | + | C1H3g17239 | CX3g029527 | LOC_Os03g06630 | Os03g0795900 | HSFA2E, HSfA2e, OsHsfA2e, OsHsf-12, HSF12 | Detail |
| C2H3g18594 | 3:2,887,211-2,888,499 | + | - | - | - | - | - | Detail |
| C2H3g18217 | 3:2,889,436-2,891,957 | + | C1H3g19807 | CX3g030288 | LOC_Os03g06654 | Os03g0162000 | COW1, OsCOW1, oscow1, OsYUC8, NAL7, OsYUCCA8, FMO, OsFMO(t) | Detail |
| C2H3g01853 | 3:2,903,303-2,903,873 | + | C1H3g07386 | CX3g030521 | LOC_Os03g06670 | Os03g0162200 | - | Detail |
| C2H3g21314 | 3:2,911,394-2,912,892 | + | C1H3g24759 | CX3g025819 | LOC_Os03g06680 | Os03g0162500 | OsDUF50604 | Detail |
| C2H3g14410 | 3:2,930,448-2,934,898 | + | C1H3g16348 | CX3g029826 | LOC_Os03g06705 | Os03g0162800 | - | Detail |
| C2H3g28634 | 3:2,935,603-2,936,034 | + | C1H3g31273 | - | - | - | - | Detail |
| C2H3g14053 | 3:2,936,052-2,938,523 | + | C1H3g16422 | CX3g027686 | LOC_Os03g06710 | Os03g0162900 | - | Detail |
| C2H3g03063 | 3:2,941,941-2,943,677 | + | C1H3g04672 | - | - | Os03g0163000 | - | Detail |
| C2H3g15393 | 3:2,944,725-2,952,303 | + | C1H3g10390 | CX3g025042 | LOC_Os03g06720 | Os03g0163100 | - | Detail |
| C2H3g06714 | 3:2,952,491-2,953,976 | + | C1H3g23541 | CX3g025042 | LOC_Os03g06730 | Os03g0163200 | - | Detail |
| C2H3g22693 | 3:2,954,872-2,959,579 | + | C1H3g17347 | CX3g026090 | LOC_Os03g06740 | Os03g0163300 | - | Detail |
| C2H3g01887 | 3:2,960,166-2,961,935 | - | C1H3g06657 | CX3g029299 | LOC_Os03g06750 | Os03g0163400 | - | Detail |
| C2H3g29355 | 3:2,964,329-2,966,695 | + | C1H3g03297 | CX3g026455 | LOC_Os03g06760 | Os03g0163500 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002698 | 1:27,269,201-27,272,331 | - | C1H1g05462 | C2H1g25202 | LOC_Os01g53130 | Os01g0731800 | - | Detail |
| CX1g002007 | 1:27,282,518-27,282,730 | - | C1H1g13195 | C2H1g12212 | - | Os01g0732000 | - | Detail |
| CX1g005912 | 1:27,283,043-27,283,282 | + | C1H1g19403 | C2H1g12385 | LOC_Os01g53140 | Os01g0750800 | - | Detail |
| CX1g006701 | 1:27,286,500-27,290,329 | + | C1H1g18233 | C2H1g09330 | LOC_Os01g53150 | Os01g0732200 | - | Detail |
| CX1g004925 | 1:27,292,204-27,293,175 | + | C1H1g04807 | - | LOC_Os01g53160 | Os01g0732300 | OFP3 | Detail |
| CX1g000356 | 1:27,308,093-27,310,743 | + | C1H1g17097 | C2H1g23680 | LOC_Os01g53200 | Os01g0732700 | YUCCA3, OsYUCCA3 | Detail |
| CX1g000815 | 1:27,311,868-27,312,086 | + | - | - | - | - | - | Detail |
| CX1g002859 | 1:27,314,099-27,314,437 | - | C1H1g06233 | C2H1g25806 | - | - | - | Detail |
| CX1g003483 | 1:27,320,938-27,321,788 | + | C1H1g02415 | C2H1g04447 | LOC_Os01g53220 | Os01g0733200 | OsHsfC1b | Detail |
| CX1g006706 | 1:27,329,445-27,329,828 | - | C1H1g21238 | C2H1g19099 | LOC_Os05g03030 | Os05g0121500 | - | Detail |
| CX1g006230 | 1:27,331,853-27,332,020 | + | - | - | - | - | - | Detail |
| CX1g000184 | 1:27,334,254-27,336,282 | + | C1H1g25026 | C2H1g23186 | LOC_Os01g53240 | Os01g0733500 | - | Detail |
| CX1g001304 | 1:27,338,053-27,342,970 | - | C1H1g17481 | C2H1g16933 | LOC_Os01g53250 | Os01g0733600 | - | Detail |
| CX1g001858 | 1:27,349,798-27,353,170 | + | C1H1g18098 | C2H1g28398 | LOC_Os01g53260 | Os01g0734000 | OsWRKY23 | Detail |
| CX1g000236 | 1:27,356,417-27,356,632 | - | - | - | - | - | - | Detail |
| CX1g006620 | 1:27,357,111-27,357,661 | + | C1H1g05786 | C2H1g03923 | LOC_Os01g53280 | Os01g0734100 | - | Detail |
| CX1g004251 | 1:27,367,830-27,375,290 | + | C1H1g09802 | C2H1g19534 | LOC_Os01g53294 | Os01g0734200 | OsRbohA, OsNOX2 | Detail |
| CX1g001402 | 1:27,378,313-27,378,949 | - | C1H1g03864 | - | - | Os09g0391800 | - | Detail |
| CX1g003307 | 1:27,382,401-27,383,846 | + | C1H1g16727 | C2H1g09241 | LOC_Os01g53330 | Os01g0734600 | OsUGT1 | Detail |
| CX1g003337 | 1:27,390,167-27,391,603 | + | C1H1g16727 | C2H1g09241 | LOC_Os01g53350 | Os01g0734800 | - | Detail |