| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H3g16330 | 3:33,552,540-33,557,647 | + | C2H3g08868 | CX3g030691 | LOC_Os03g64250 | Os03g0860000 | - | Detail |
| C1H3g08606 | 3:33,565,584-33,581,864 | - | C2H3g04480 | CX3g027910 | LOC_Os03g64290 | Os03g0860700 | - | Detail |
| C1H3g27781 | 3:33,586,510-33,592,811 | + | C2H3g22239 | CX3g029996 | LOC_Os03g64300 | Os03g0860900 | - | Detail |
| C1H3g04412 | 3:33,593,879-33,604,834 | + | C2H3g11459 | CX3g027284 | LOC_Os03g64320 | Os03g0861100 | - | Detail |
| C1H3g04119 | 3:33,612,242-33,613,617 | - | C2H3g16452 | CX3g031284 | LOC_Os03g64340 | Os03g0861400 | - | Detail |
| C1H3g17429 | 3:33,619,949-33,625,103 | - | C2H3g12472 | CX3g030656 | LOC_Os03g64350 | Os03g0861700 | - | Detail |
| C1H3g24824 | 3:33,625,267-33,628,020 | + | C2H3g08959 | CX3g028909 | LOC_Os03g64360 | Os03g0861800 | - | Detail |
| C1H3g08341 | 3:33,638,279-33,645,157 | + | C2H3g16629 | CX3g029193 | LOC_Os03g64400 | Os03g0862100 | - | Detail |
| C1H4g00861 | 4:16,416-19,947 | + | C2H4g13233 | CX4g032894 | LOC_Os04g01070 | Os04g0100300 | - | Detail |
| C1H4g16035 | 4:16,510-18,252 | - | C2H4g12191 | - | - | - | - | Detail |
| C1H4g09455 | 4:39,781-40,005 | - | C2H12g12031 | CX4g034444 | LOC_Os02g17030 | - | - | Detail |
| C1H4g03520 | 4:42,032-50,044 | + | C2H4g17137 | CX4g036339 | LOC_Os08g33280 | - | - | Detail |
| C1H4g00970 | 4:97,742-106,695 | + | C2H4g05647 | CX4g034809 | LOC_Os04g01130 | Os04g0101300 | - | Detail |
| C1H4g04170 | 4:108,701-110,550 | - | C2H4g16448 | CX4g034027 | LOC_Os04g01140 | Os04g0101400 | CYP93G1, OsCYP93G1, OsFNSII, FNSII | Detail |
| C1H4g21331 | 4:124,561-127,342 | + | C2H4g17331 | CX4g033419 | LOC_Os04g01150 | Os04g0101700 | - | Detail |
| C1H4g00085 | 4:129,761-132,613 | - | C2H4g10066 | CX4g031572 | LOC_Os04g01160 | Os04g0101800 | SOR1 | Detail |
| C1H4g29729 | 4:176,858-177,094 | + | C2H4g10312 | - | - | - | - | Detail |
| C1H4g11244 | 4:177,315-182,878 | + | C2H4g18592 | CX4g036467 | LOC_Os04g01230 | Os04g0102500 | - | Detail |
| C1H4g30914 | 4:183,184-187,055 | - | C2H4g15768 | CX4g033514 | LOC_Os04g01240 | Os04g0102600 | - | Detail |
| C1H4g22444 | 4:188,075-197,428 | - | C2H4g26141 | CX4g035629 | LOC_Os04g01250 | Os04g0102700 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX7g046394 | 7:16,412,586-16,414,707 | - | C1H7g27843 | C2H7g01918 | LOC_Os07g33954 | Os07g0523965 | - | Detail |
| CX7g049762 | 7:16,419,224-16,419,427 | + | - | - | - | - | - | Detail |
| CX7g047458 | 7:16,432,347-16,433,337 | + | C1H7g23168 | C2H7g05091 | LOC_Os07g34020 | Os07g0524000 | - | Detail |
| CX7g049418 | 7:16,442,912-16,443,088 | + | - | - | - | - | - | Detail |
| CX7g049956 | 7:16,445,327-16,450,887 | + | C1H7g08538 | C2H7g25455 | LOC_Os07g34030 | Os07g0524100 | - | Detail |
| CX7g048821 | 7:16,452,074-16,452,715 | + | C1H7g12047 | - | LOC_Os07g34040 | Os07g0524200 | - | Detail |
| CX7g048052 | 7:16,454,629-16,455,201 | + | C1H7g03634 | C2H7g17735 | LOC_Os07g34050 | Os07g0524400 | - | Detail |
| CX7g048327 | 7:16,467,070-16,468,879 | - | C1H7g04570 | C2H7g05767 | LOC_Os07g34070 | Os07g0524900 | - | Detail |
| CX7g047450 | 7:16,478,493-16,481,250 | - | C1H7g03935 | C2H7g20767 | LOC_Os07g34110 | Os07g0525100 | OsCLIP | Detail |
| CX7g046068 | 7:16,492,717-16,497,509 | + | C1H7g28468 | C2H7g05781 | LOC_Os07g34130 | Os07g0525400 | - | Detail |
| CX7g047797 | 7:16,500,610-16,501,976 | - | C1H7g12171 | C2H7g07619 | LOC_Os07g34140 | Os07g0525500 | - | Detail |
| CX7g046915 | 7:16,504,222-16,505,558 | - | C1H7g13078 | C2H7g06123 | LOC_Os07g34190 | Os07g0525900 | - | Detail |
| CX7g049256 | 7:16,531,174-16,536,078 | + | C1H7g06696 | C2H7g13583 | LOC_Os07g34240 | Os07g0526600 | - | Detail |
| CX7g048674 | 7:16,535,042-16,538,981 | - | - | - | LOC_Os07g34250 | Os07g0423700 | - | Detail |
| CX7g050325 | 7:16,541,029-16,542,336 | - | C1H7g30999 | C2H7g05417 | LOC_Os07g34260 | Os07g0526400 | - | Detail |
| CX7g047291 | 7:16,560,066-16,561,463 | + | C1H7g06696 | C2H7g13583 | LOC_Os07g34280 | Os07g0526600 | - | Detail |
| CX7g046517 | 7:16,569,772-16,570,008 | - | - | - | - | - | - | Detail |
| CX7g047910 | 7:16,570,895-16,571,149 | + | C1H7g05467 | - | LOC_Os06g09250 | - | - | Detail |
| CX7g046017 | 7:16,584,427-16,588,449 | + | C1H7g31290 | C2H7g15075 | LOC_Os07g34320 | Os07g0527000 | - | Detail |
| CX7g046146 | 7:16,590,967-16,591,284 | - | - | - | - | - | - | Detail |