| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H4g11981 | 4:22,247,167-22,262,155 | - | C2H4g20441 | CX4g034232 | LOC_Os04g43050 | Os04g0509300 | DCL4, OsDCL4, Os DCL4, Dcl4 | Detail |
| C1H4g16776 | 4:22,265,929-22,266,408 | + | C2H4g11339 | CX4g036588 | LOC_Os04g43060 | Os04g0509400 | - | Detail |
| C1H4g16652 | 4:22,273,773-22,275,269 | + | C2H4g01906 | CX2g024932 | LOC_Os04g43070 | Os04g0509600 | - | Detail |
| C1H4g26953 | 4:22,289,040-22,297,319 | + | C2H4g26482 | CX4g031449 | LOC_Os04g43130 | Os04g0510300 | - | Detail |
| C1H4g20471 | 4:22,297,962-22,303,906 | - | C2H4g00596 | CX4g031438 | LOC_Os04g43140 | Os04g0510400 | - | Detail |
| C1H4g03093 | 4:22,306,343-22,311,917 | + | C2H4g19563 | CX4g035958 | LOC_Os04g43150 | Os04g0510500 | - | Detail |
| C1H4g15211 | 4:22,312,483-22,313,610 | - | C2H4g02205 | CX4g032117 | LOC_Os04g43160 | Os04g0510600 | - | Detail |
| C1H4g29813 | 4:22,314,260-22,316,880 | - | C2H4g20983 | CX4g033894 | LOC_Os04g43164 | Os04g0510700 | - | Detail |
| C1H4g14181 | 4:22,318,026-22,318,794 | - | C2H4g07283 | CX4g036379 | LOC_Os04g43170 | Os04g0510900 | - | Detail |
| C1H4g12029 | 4:22,319,072-22,319,383 | - | C2H4g07283 | CX4g036379 | LOC_Os04g43170 | Os04g0510900 | - | Detail |
| C1H4g05553 | 4:22,324,231-22,325,673 | - | C2H4g15069 | CX4g033517 | LOC_Os04g43200 | Os04g0511200 | OsClo5, OsEFA27 | Detail |
| C1H4g09400 | 4:22,327,296-22,329,770 | - | C2H4g28433 | CX4g033340 | LOC_Os04g43210 | Os04g0511400 | - | Detail |
| C1H4g08179 | 4:22,333,306-22,339,230 | - | C2H4g23749 | CX4g035801 | LOC_Os04g43220 | Os04g0511600 | - | Detail |
| C1H4g06483 | 4:22,340,677-22,342,821 | - | C2H4g20352 | CX4g032463 | LOC_Os04g43230 | Os04g0511700 | - | Detail |
| C1H4g23962 | 4:22,345,909-22,354,374 | - | C2H4g11071 | CX4g032044 | LOC_Os04g43270 | Os04g0512200 | - | Detail |
| C1H4g05127 | 4:22,357,820-22,358,279 | - | C2H4g01985 | CX4g033280 | LOC_Os04g43290 | Os04g0512300 | OsGASD | Detail |
| C1H4g13576 | 4:22,359,001-22,360,364 | - | C2H4g01985 | CX4g033280 | LOC_Os04g43290 | Os04g0512300 | OsGASD | Detail |
| C1H4g19931 | 4:22,360,962-22,365,118 | - | C2H4g16701 | CX4g034378 | LOC_Os04g43300 | Os04g0512400 | - | Detail |
| C1H4g27340 | 4:22,367,404-22,367,799 | - | C2H4g10802 | CX4g035063 | LOC_Os04g43310 | Os04g0512500 | - | Detail |
| C1H4g13563 | 4:22,380,486-22,385,136 | - | C2H4g29440 | CX4g033268 | LOC_Os04g43340 | Os04g0512900 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g001354 | 1:27,149,398-27,153,428 | - | C1H1g29225 | C2H1g21067 | LOC_Os01g52790 | Os01g0728300 | - | Detail |
| CX1g001403 | 1:27,157,889-27,158,738 | - | C1H1g27738 | C2H1g25878 | LOC_Os01g52830 | Os01g0728700 | - | Detail |
| CX1g004662 | 1:27,162,689-27,166,095 | + | C1H1g16764 | C2H1g00719 | LOC_Os01g52864 | Os01g0729100 | - | Detail |
| CX1g002045 | 1:27,167,408-27,168,772 | + | C1H1g19788 | C2H1g23554 | LOC_Os01g52880 | Os01g0729400 | - | Detail |
| CX1g001938 | 1:27,174,103-27,176,046 | - | C1H1g29198 | C2H1g01846 | LOC_Os01g52900 | Os01g0729600 | - | Detail |
| CX1g001715 | 1:27,184,430-27,185,137 | + | - | - | - | - | - | Detail |
| CX1g000225 | 1:27,186,515-27,187,061 | + | C1H1g12568 | C2H1g05129 | LOC_Os01g52630 | Os01g0725600 | - | Detail |
| CX1g002816 | 1:27,195,822-27,199,370 | + | C1H1g12193 | C2H1g03641 | LOC_Os01g52920 | Os01g0729900 | - | Detail |
| CX1g003999 | 1:27,200,466-27,201,258 | + | - | C2H1g16868 | LOC_Os01g52960 | - | - | Detail |
| CX1g001631 | 1:27,201,817-27,203,404 | - | C1H1g12702 | C2H1g19584 | LOC_Os01g52970 | Os01g0730100 | - | Detail |
| CX1g000876 | 1:27,206,020-27,207,832 | - | C1H1g06718 | C2H1g18512 | LOC_Os01g52980 | Os01g0730200 | - | Detail |
| CX1g004752 | 1:27,213,632-27,217,545 | + | C1H1g07765 | C2H1g28261 | LOC_Os01g53000 | Os01g0730300 | - | Detail |
| CX1g003941 | 1:27,220,027-27,220,329 | - | - | - | LOC_Os01g53010 | Os01g0730400 | - | Detail |
| CX1g000426 | 1:27,224,003-27,226,214 | + | C1H1g14431 | C2H1g16061 | LOC_Os01g53020 | Os01g0730500 | - | Detail |
| CX1g000294 | 1:27,226,693-27,227,307 | - | C1H1g06535 | C2H1g14164 | LOC_Os01g53030 | Os01g0730600 | - | Detail |
| CX1g001404 | 1:27,235,960-27,237,057 | - | C1H1g09914 | C2H1g00487 | LOC_Os01g53040 | Os01g0730700 | OsWRKY14 | Detail |
| CX1g000168 | 1:27,240,158-27,241,785 | + | C1H1g06745 | C2H1g11513 | LOC_Os01g53060 | Os01g0730800 | - | Detail |
| CX1g001666 | 1:27,243,722-27,248,633 | - | C1H1g24583 | C2H1g14311 | LOC_Os01g53070 | Os01g0730900 | - | Detail |
| CX1g001800 | 1:27,253,997-27,259,429 | - | C1H1g26539 | C2H1g06139 | LOC_Os01g53079 | Os01g0731000 | - | Detail |
| CX1g003452 | 1:27,264,038-27,265,121 | - | - | - | - | Os01g0731600 | - | Detail |