| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H1g03677 | 1:5,228,990-5,233,936 | - | C2H1g07094 | CX1g001003 | LOC_Os01g11120 | Os01g0209400 | - | Detail |
| C1H1g12202 | 1:5,240,740-5,247,086 | - | C2H1g19634 | CX1g000194 | LOC_Os01g11130 | Os01g0209500 | - | Detail |
| C1H1g22199 | 1:5,260,169-5,263,608 | - | C2H1g00003 | CX1g004422 | LOC_Os01g11150 | Os01g0209700 | GA2ox7 | Detail |
| C1H1g04985 | 1:5,275,210-5,277,507 | - | C2H1g04035 | CX1g004758 | LOC_Os01g11160 | Os01g0209800 | - | Detail |
| C1H1g27615 | 1:5,290,703-5,291,914 | + | C2H1g10978 | CX1g001982 | LOC_Os01g11210 | Os01g0210300 | - | Detail |
| C1H1g05366 | 1:5,292,191-5,294,314 | - | C2H1g29549 | CX1g004173 | LOC_Os01g11220 | Os01g0210400 | OsTOD1 | Detail |
| C1H1g26696 | 1:5,295,196-5,296,298 | - | - | - | LOC_Os01g11230 | - | - | Detail |
| C1H1g15458 | 1:5,308,574-5,312,697 | + | C2H1g02275 | - | - | Os01g0210750 | - | Detail |
| C1H1g12886 | 1:5,309,605-5,313,470 | - | C2H1g05349 | CX1g002610 | LOC_Os01g11250 | Os01g0210700 | KAT2, OsKAT2 | Detail |
| C1H1g30027 | 1:5,316,751-5,321,347 | + | C2H1g07302 | CX1g004526 | LOC_Os01g11260 | Os01g0210800 | - | Detail |
| C1H1g07906 | 1:5,367,183-5,368,508 | - | C2H1g05400 | - | LOC_Os01g11350 | Os01g0211800 | - | Detail |
| C1H1g25024 | 1:5,381,875-5,394,457 | + | C2H1g30364 | CX1g006413 | LOC_Os01g11370 | Os01g0212100 | - | Detail |
| C1H1g24516 | 1:5,402,401-5,407,612 | + | C2H1g07400 | CX1g004990 | LOC_Os01g11414 | Os01g0212400 | - | Detail |
| C1H1g10197 | 1:5,408,201-5,409,925 | - | C2H1g07852 | CX1g007192 | LOC_Os01g11430 | Os01g0212500 | OsTIE1 | Detail |
| C1H1g30544 | 1:5,417,884-5,418,288 | - | - | - | - | - | - | Detail |
| C1H1g26340 | 1:5,433,082-5,438,674 | - | C2H1g19922 | CX1g001182 | LOC_Os01g11460 | Os01g0212700 | - | Detail |
| C1H1g22295 | 1:5,441,280-5,441,984 | - | C2H1g00533 | CX1g001182 | LOC_Os01g11490 | Os01g0213100 | - | Detail |
| C1H1g24050 | 1:5,445,123-5,445,803 | - | C2H1g20430 | CX1g001182 | LOC_Os01g11500 | Os01g0213100 | - | Detail |
| C1H1g28036 | 1:5,473,048-5,474,935 | - | C2H1g27187 | CX1g004394 | LOC_Os01g11550 | Os01g0213800 | OsPCF5, PCF5, OsTCP1, OsTCP1/PCF5 | Detail |
| C1H1g17492 | 1:5,497,154-5,499,229 | - | C2H1g17634 | CX1g003866 | LOC_Os01g11570 | Os01g0214200 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g006444 | 1:2,309,629-2,312,863 | + | C1H1g31823 | C2H1g04685 | LOC_Os01g05800 | Os01g0151200 | OsALB3 | Detail |
| CX1g000317 | 1:2,314,944-2,315,138 | - | - | - | - | Os07g0616100 | - | Detail |
| CX1g002082 | 1:2,315,692-2,320,521 | + | C1H1g06017 | C2H1g05574 | LOC_Os01g05810 | Os01g0151400 | - | Detail |
| CX1g004686 | 1:2,321,892-2,326,593 | + | C1H1g05595 | C2H1g26068 | LOC_Os01g05820 | Os01g0151500 | - | Detail |
| CX1g003613 | 1:2,331,187-2,335,009 | + | C1H1g31170 | C2H1g03197 | LOC_Os01g05830 | Os01g0151600 | - | Detail |
| CX1g001726 | 1:2,341,870-2,344,577 | + | C1H1g20436 | C2H1g12467 | LOC_Os01g05840 | Os01g0151700 | - | Detail |
| CX1g001872 | 1:2,345,569-2,345,964 | - | - | - | LOC_Os01g05850 | - | - | Detail |
| CX1g005308 | 1:2,447,819-2,448,286 | + | C1H1g18348 | C2H1g27325 | LOC_Os01g06010 | Os01g0153300 | - | Detail |
| CX1g006939 | 1:2,449,280-2,457,918 | + | C1H1g26052 | C2H1g00877 | LOC_Os01g06020 | Os01g0153400 | - | Detail |
| CX1g002736 | 1:2,461,378-2,462,055 | + | C1H1g28528 | C2H1g24436 | LOC_Os01g06070 | Os01g0153900 | - | Detail |
| CX1g006083 | 1:2,462,990-2,464,210 | - | C1H1g10140 | C2H1g02977 | LOC_Os01g06040 | Os01g0153600 | - | Detail |
| CX1g000606 | 1:2,466,119-2,467,150 | + | - | C2H1g13732 | LOC_Os01g06060 | Os01g0153800 | - | Detail |
| CX1g004075 | 1:2,486,449-2,487,257 | + | C1H1g00559 | C2H1g27678 | LOC_Os01g06130 | Os01g0154500 | - | Detail |
| CX1g002971 | 1:2,489,796-2,490,847 | + | C1H1g04376 | C2H1g07508 | LOC_Os01g06140 | Os01g0154500 | - | Detail |
| CX1g001280 | 1:2,495,719-2,496,551 | + | C1H1g28503 | C2H1g27678 | LOC_Os01g06150 | Os01g0154600 | - | Detail |
| CX1g002692 | 1:2,496,803-2,504,240 | + | C1H1g06489 | - | - | - | - | Detail |
| CX1g001221 | 1:2,505,188-2,506,195 | - | - | C2H1g09424 | LOC_Os01g06220 | Os01g0155000 | - | Detail |
| CX1g006185 | 1:2,506,640-2,506,813 | - | - | - | - | Os02g0188201 | - | Detail |
| CX1g002977 | 1:2,509,267-2,509,542 | + | - | - | LOC_Os01g06230 | - | - | Detail |
| CX1g006111 | 1:2,510,400-2,512,892 | - | C1H1g19662 | C2H1g01659 | LOC_Os01g06240 | Os01g0155200 | SDRLK-11 | Detail |