| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H3g01904 | 3:23,403,891-23,405,834 | - | C2H3g07109 | CX3g026785 | LOC_Os03g52310 | Os03g0563400 | - | Detail |
| C1H3g20730 | 3:23,405,921-23,407,174 | - | C2H3g21207 | CX3g027695 | LOC_Os03g52310 | Os03g0563400 | - | Detail |
| C1H3g06671 | 3:23,407,184-23,408,387 | - | C2H3g10008 | - | - | Os03g0264950 | - | Detail |
| C1H3g27594 | 3:23,409,332-23,409,727 | - | C2H3g18503 | - | - | - | - | Detail |
| C1H3g09156 | 3:23,411,289-23,416,517 | - | C2H3g26081 | CX3g026196 | LOC_Os03g44050 | Os03g0642600 | - | Detail |
| C1H3g16503 | 3:23,420,216-23,424,022 | - | C2H3g02709 | CX12g016225 | LOC_Os03g44100 | Os03g0642900 | - | Detail |
| C1H3g13161 | 3:23,427,932-23,428,816 | - | C2H3g02627 | CX12g016225 | LOC_Os03g44100 | Os03g0642900 | - | Detail |
| C1H3g16103 | 3:23,431,780-23,434,579 | - | C2H3g02709 | CX12g016225 | LOC_Os03g44140 | Os03g0643000 | - | Detail |
| C1H3g12435 | 3:23,437,347-23,438,414 | - | - | - | - | - | - | Detail |
| C1H3g14328 | 3:23,438,955-23,448,780 | - | C2H3g22187 | CX3g030764 | LOC_Os03g44140 | Os03g0643250 | - | Detail |
| C1H3g15657 | 3:23,450,007-23,453,859 | - | C2H3g09910 | CX3g026745 | LOC_Os03g44150 | Os03g0643300 | OsOAT | Detail |
| C1H3g26318 | 3:23,459,971-23,465,367 | + | C2H3g18518 | CX3g026309 | LOC_Os03g44200 | Os03g0644000 | ATG6B, OsATG6b, OsATG6c | Detail |
| C1H3g21507 | 3:23,465,498-23,470,402 | - | C2H3g26037 | CX3g028043 | LOC_Os03g44210 | Os03g0644200 | WAL3 | Detail |
| C1H3g30497 | 3:23,478,079-23,482,022 | - | C2H3g15139 | CX3g027891 | LOC_Os03g44230 | Os03g0644400 | - | Detail |
| C1H3g01739 | 3:23,488,305-23,489,490 | + | - | - | - | - | - | Detail |
| C1H3g27278 | 3:23,510,948-23,512,494 | + | C2H3g27117 | CX3g031229 | LOC_Os03g44260 | Os03g0644700 | - | Detail |
| C1H3g27224 | 3:23,519,082-23,521,962 | + | C2H3g12166 | CX3g025553 | LOC_Os03g44290 | Os03g0645000 | - | Detail |
| C1H3g30344 | 3:23,527,261-23,527,632 | + | - | CX3g027088 | - | - | - | Detail |
| C1H3g23863 | 3:23,530,249-23,532,923 | + | C2H3g18553 | CX3g025383 | LOC_Os03g44300 | Os03g0645100 | - | Detail |
| C1H3g29402 | 3:23,533,339-23,538,549 | - | C2H3g29997 | CX3g028384 | LOC_Os03g44310 | Os03g0645200 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX7g048988 | 7:14,441,033-14,445,043 | + | C1H7g01187 | C2H7g08081 | LOC_Os07g29810 | Os07g0481300 | - | Detail |
| CX7g049622 | 7:14,459,735-14,460,658 | + | C1H7g20643 | C2H7g01767 | LOC_Os07g31070 | Os07g0482433 | - | Detail |
| CX7g046236 | 7:14,464,901-14,466,400 | + | C1H7g12460 | C2H7g00792 | LOC_Os07g29830 | Os07g0492966 | - | Detail |
| CX7g046285 | 7:14,478,081-14,480,902 | - | C1H7g25439 | C2H7g03865 | LOC_Os07g29960 | Os07g0482900 | - | Detail |
| CX7g049007 | 7:14,499,816-14,499,998 | + | - | - | - | Os07g0616100 | - | Detail |
| CX7g046925 | 7:14,509,149-14,510,882 | - | C1H7g00758 | C2H7g12658 | LOC_Os07g30020 | Os07g0483500 | - | Detail |
| CX7g049843 | 7:14,533,403-14,534,818 | + | C1H7g20920 | C2H7g24842 | LOC_Os07g30090 | Os07g0484200 | - | Detail |
| CX7g047443 | 7:14,537,397-14,548,843 | - | C1H7g24417 | C2H7g15400 | LOC_Os07g30100 | Os07g0484300 | - | Detail |
| CX7g050338 | 7:14,566,671-14,566,826 | - | - | - | - | - | - | Detail |
| CX7g046292 | 7:14,572,698-14,576,418 | + | C1H7g17450 | C2H7g08443 | LOC_Os07g30110 | Os07g0484500 | - | Detail |
| CX7g047351 | 7:14,608,982-14,610,941 | + | C1H7g14423 | C2H7g13834 | LOC_Os07g30160 | Os07g0485000 | - | Detail |
| CX7g048078 | 7:14,611,493-14,614,335 | - | C1H7g26216 | C2H7g08877 | LOC_Os07g30170 | Os07g0485100 | Osb-UP, Osbeta-UP, Osβ-UP | Detail |
| CX7g046479 | 7:14,622,488-14,624,458 | + | C1H7g07367 | C2H7g20794 | LOC_Os07g32910 | - | - | Detail |
| CX7g049962 | 7:14,624,561-14,625,114 | - | - | - | - | - | - | Detail |
| CX7g046682 | 7:14,626,803-14,632,875 | + | C1H7g17380 | C2H7g13444 | LOC_Os07g30200 | Os07g0485400 | - | Detail |
| CX7g048279 | 7:14,633,431-14,637,112 | - | C1H7g26491 | C2H7g07219 | LOC_Os07g30210 | Os07g0485500 | - | Detail |
| CX7g046022 | 7:14,639,017-14,639,797 | - | C1H7g03824 | C2H7g22225 | LOC_Os07g30220 | Os07g0485600 | - | Detail |
| CX7g050000 | 7:14,641,635-14,651,188 | + | C1H7g24847 | C2H7g21520 | LOC_Os07g30240 | Os07g0486000 | OsMSH4, MSH4 | Detail |
| CX7g046844 | 7:14,652,595-14,658,899 | - | C1H7g29218 | C2H7g19758 | LOC_Os07g30250 | Os07g0486100 | - | Detail |
| CX7g046530 | 7:14,659,294-14,659,467 | - | - | - | - | - | - | Detail |