| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H3g30034 | 3:1,473,834-1,479,587 | + | C2H3g30344 | CX3g026694 | LOC_Os03g03680 | Os03g0128932 | OsAZT3 | Detail |
| C1H3g26756 | 3:1,484,404-1,486,683 | + | C2H3g21860 | CX3g026791 | LOC_Os03g03690 | Os03g0129000 | OsPIG-F, PIG-F | Detail |
| C1H3g08238 | 3:1,487,075-1,490,723 | - | C2H3g23213 | CX3g030210 | LOC_Os03g03700 | Os03g0129100 | - | Detail |
| C1H3g14096 | 3:1,495,192-1,503,539 | - | C2H3g26117 | CX3g028820 | LOC_Os03g03710 | Os03g0129200 | - | Detail |
| C1H3g27982 | 3:1,504,077-1,507,573 | + | C2H3g26797 | CX3g028073 | LOC_Os03g03720 | Os03g0129300 | - | Detail |
| C1H3g08454 | 3:1,509,217-1,509,630 | + | C2H3g27426 | CX3g030443 | - | Os03g0129400 | - | Detail |
| C1H3g20373 | 3:1,509,954-1,512,589 | - | C2H3g07876 | CX3g026210 | LOC_Os03g03730 | Os03g0129800 | - | Detail |
| C1H3g01611 | 3:1,514,016-1,514,345 | - | C2H3g29721 | CX3g026524 | LOC_Os03g03760 | - | - | Detail |
| C1H3g14716 | 3:1,514,497-1,518,794 | - | C2H3g13057 | CX3g026524 | LOC_Os03g03760 | Os03g0624000 | - | Detail |
| C1H3g28130 | 3:1,527,218-1,530,084 | - | - | - | - | Os03g0129850 | - | Detail |
| C1H3g30382 | 3:1,535,201-1,535,536 | - | C2H3g05832 | CX3g030654 | LOC_Os03g03770 | Os03g0129900 | - | Detail |
| C1H3g27546 | 3:1,553,842-1,556,113 | + | C2H3g07821 | CX3g028774 | LOC_Os03g03790 | Os03g0130100 | OsCNL1 | Detail |
| C1H3g09567 | 3:1,558,977-1,559,702 | + | C2H3g09589 | CX3g030766 | LOC_Os03g22700 | - | - | Detail |
| C1H3g01006 | 3:1,562,020-1,562,374 | + | C2H3g10593 | CX3g027416 | LOC_Os03g03810 | Os03g0130300 | OsDEF8 | Detail |
| C1H3g27010 | 3:1,563,645-1,566,964 | + | C2H3g18638 | CX3g029936 | LOC_Os03g03820 | Os03g0130400 | - | Detail |
| C1H3g11205 | 3:1,567,280-1,575,087 | - | C2H3g06449 | CX3g030536 | LOC_Os03g03830 | Os03g0130500 | - | Detail |
| C1H3g17616 | 3:1,579,109-1,583,980 | - | C2H3g20859 | CX3g029509 | LOC_Os03g03860 | Os03g0130700 | - | Detail |
| C1H3g26036 | 3:1,587,982-1,590,312 | - | C2H3g08783 | CX3g029309 | - | Os03g0130750 | - | Detail |
| C1H3g08344 | 3:1,592,535-1,598,584 | + | C2H3g05534 | CX3g026936 | LOC_Os03g03870 | Os03g0130800 | - | Detail |
| C1H3g09568 | 3:1,606,172-1,613,443 | + | C2H3g28810 | CX3g028472 | LOC_Os03g03880 | Os03g0130900 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX7g048988 | 7:14,441,033-14,445,043 | + | C1H7g01187 | C2H7g08081 | LOC_Os07g29810 | Os07g0481300 | - | Detail |
| CX7g049622 | 7:14,459,735-14,460,658 | + | C1H7g20643 | C2H7g01767 | LOC_Os07g31070 | Os07g0482433 | - | Detail |
| CX7g046236 | 7:14,464,901-14,466,400 | + | C1H7g12460 | C2H7g00792 | LOC_Os07g29830 | Os07g0492966 | - | Detail |
| CX7g046285 | 7:14,478,081-14,480,902 | - | C1H7g25439 | C2H7g03865 | LOC_Os07g29960 | Os07g0482900 | - | Detail |
| CX7g049007 | 7:14,499,816-14,499,998 | + | - | - | - | Os07g0616100 | - | Detail |
| CX7g046925 | 7:14,509,149-14,510,882 | - | C1H7g00758 | C2H7g12658 | LOC_Os07g30020 | Os07g0483500 | - | Detail |
| CX7g049843 | 7:14,533,403-14,534,818 | + | C1H7g20920 | C2H7g24842 | LOC_Os07g30090 | Os07g0484200 | - | Detail |
| CX7g047443 | 7:14,537,397-14,548,843 | - | C1H7g24417 | C2H7g15400 | LOC_Os07g30100 | Os07g0484300 | - | Detail |
| CX7g050338 | 7:14,566,671-14,566,826 | - | - | - | - | - | - | Detail |
| CX7g046292 | 7:14,572,698-14,576,418 | + | C1H7g17450 | C2H7g08443 | LOC_Os07g30110 | Os07g0484500 | - | Detail |
| CX7g047351 | 7:14,608,982-14,610,941 | + | C1H7g14423 | C2H7g13834 | LOC_Os07g30160 | Os07g0485000 | - | Detail |
| CX7g048078 | 7:14,611,493-14,614,335 | - | C1H7g26216 | C2H7g08877 | LOC_Os07g30170 | Os07g0485100 | Osb-UP, Osbeta-UP, Osβ-UP | Detail |
| CX7g046479 | 7:14,622,488-14,624,458 | + | C1H7g07367 | C2H7g20794 | LOC_Os07g32910 | - | - | Detail |
| CX7g049962 | 7:14,624,561-14,625,114 | - | - | - | - | - | - | Detail |
| CX7g046682 | 7:14,626,803-14,632,875 | + | C1H7g17380 | C2H7g13444 | LOC_Os07g30200 | Os07g0485400 | - | Detail |
| CX7g048279 | 7:14,633,431-14,637,112 | - | C1H7g26491 | C2H7g07219 | LOC_Os07g30210 | Os07g0485500 | - | Detail |
| CX7g046022 | 7:14,639,017-14,639,797 | - | C1H7g03824 | C2H7g22225 | LOC_Os07g30220 | Os07g0485600 | - | Detail |
| CX7g050000 | 7:14,641,635-14,651,188 | + | C1H7g24847 | C2H7g21520 | LOC_Os07g30240 | Os07g0486000 | OsMSH4, MSH4 | Detail |
| CX7g046844 | 7:14,652,595-14,658,899 | - | C1H7g29218 | C2H7g19758 | LOC_Os07g30250 | Os07g0486100 | - | Detail |
| CX7g046530 | 7:14,659,294-14,659,467 | - | - | - | - | - | - | Detail |