| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H1g02341 | 1:19,552-27,397 | + | C2H1g13015 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C1H1g23301 | 1:34,909-38,077 | + | C2H1g25732 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C1H1g05541 | 1:38,658-42,693 | + | C2H1g24136 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C1H1g18141 | 1:45,137-49,100 | + | C2H1g01770 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C1H1g06702 | 1:49,316-50,669 | + | C2H1g21686 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C1H1g15122 | 1:53,886-58,091 | + | C2H1g03140 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C1H1g26676 | 1:58,983-64,706 | + | C2H1g12741 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C1H1g29605 | 1:68,013-72,703 | + | C2H1g30020 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C1H1g15874 | 1:72,685-75,717 | - | C2H1g01369 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C1H1g31238 | 1:79,440-86,394 | + | C2H1g16597 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C1H1g30351 | 1:88,972-90,382 | + | C2H1g26722 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C1H1g07147 | 1:93,453-96,885 | + | C2H1g16862 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C1H1g23624 | 1:103,904-104,966 | + | C2H1g21224 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C1H1g19237 | 1:106,332-109,626 | + | C2H1g12981 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C1H1g02228 | 1:110,056-112,714 | + | C2H1g13148 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C1H1g19000 | 1:113,782-115,921 | + | C2H1g25133 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| C1H1g20467 | 1:116,248-118,728 | + | C2H1g01047 | CX1g001371 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| C1H1g21121 | 1:119,474-124,658 | + | C2H1g05282 | CX1g006904 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| C1H1g31375 | 1:129,470-130,340 | - | C2H1g27348 | CX1g001497 | LOC_Os01g01340 | Os01g0102900 | LIR1, Lir1 | Detail |
| C1H1g31418 | 1:131,158-133,161 | - | C2H1g25360 | CX1g000859 | LOC_Os01g01350 | Os01g0103000 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H3g22413 | 3:7,356,156-7,357,259 | + | C1H3g11521 | CX3g031275 | LOC_Os03g15270 | Os03g0258200 | - | Detail |
| C2H3g12196 | 3:7,357,307-7,357,537 | - | C1H3g20981 | - | - | - | - | Detail |
| C2H3g23907 | 3:7,364,448-7,369,599 | + | C1H3g24652 | CX3g026336 | LOC_Os03g15290 | Os03g0258500 | ATG6C, OsATG6c, OsATG6b | Detail |
| C2H3g03473 | 3:7,377,137-7,378,828 | + | C1H3g15329 | CX3g028133 | LOC_Os03g15320 | Os03g0258900 | - | Detail |
| C2H3g20701 | 3:7,389,848-7,390,325 | + | C1H3g03982 | CX3g029872 | LOC_Os03g15340 | Os03g0259100 | - | Detail |
| C2H3g11980 | 3:7,391,263-7,398,836 | + | C1H3g01705 | CX3g031115 | LOC_Os03g15350 | Os03g0259300 | - | Detail |
| C2H3g23041 | 3:7,399,174-7,400,622 | - | C1H3g16374 | CX3g028643 | LOC_Os03g15360 | Os03g0259400 | - | Detail |
| C2H3g02482 | 3:7,404,258-7,405,465 | + | C1H3g08146 | CX3g027649 | LOC_Os03g15380 | Os03g0259600 | - | Detail |
| C2H3g06614 | 3:7,410,254-7,413,733 | - | C1H3g29794 | CX3g025462 | LOC_Os03g15390 | Os03g0259700 | - | Detail |
| C2H3g21664 | 3:7,419,004-7,423,187 | + | C1H3g00578 | CX3g026758 | LOC_Os03g15410 | Os03g0259900 | - | Detail |
| C2H3g30516 | 3:7,424,542-7,426,578 | + | C1H3g24107 | CX3g026569 | LOC_Os03g15420 | Os03g0260000 | - | Detail |
| C2H3g29512 | 3:7,427,095-7,431,754 | - | C1H3g10606 | CX3g025990 | LOC_Os03g15430 | Os03g0260100 | - | Detail |
| C2H3g24218 | 3:7,434,681-7,434,941 | - | C1H3g15415 | CX3g025180 | - | Os03g0260432 | - | Detail |
| C2H3g02662 | 3:7,440,817-7,441,305 | - | C1H3g24057 | CX3g027434 | LOC_Os03g11060 | Os03g0209000 | - | Detail |
| C2H3g12059 | 3:7,445,631-7,448,163 | + | C1H3g04803 | CX3g030990 | LOC_Os03g15440 | Os03g0260600 | - | Detail |
| C2H3g02089 | 3:7,461,909-7,463,426 | + | C1H3g25766 | CX3g026582 | - | Os03g0261100 | PLA2-II | Detail |
| C2H3g03272 | 3:7,468,543-7,472,872 | + | C1H3g29084 | CX3g029112 | LOC_Os03g15480 | Os03g0261500 | - | Detail |
| C2H3g15693 | 3:7,485,582-7,486,799 | - | C1H3g27014 | CX3g025214 | LOC_Os03g15530 | Os03g0261800 | - | Detail |
| C2H3g11801 | 3:7,500,010-7,509,476 | - | C1H3g01966 | CX3g031071 | LOC_Os03g15540 | Os03g0261900 | - | Detail |
| C2H3g12029 | 3:7,514,018-7,518,017 | + | C1H3g00077 | CX3g028948 | LOC_Os03g15550 | Os03g0262000 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX7g048001 | 7:12,245,994-12,252,440 | - | C1H7g12906 | C2H7g05830 | LOC_Os07g25740 | Os07g0439100 | - | Detail |
| CX7g048283 | 7:12,296,614-12,300,318 | - | - | C2H7g15710 | - | - | - | Detail |
| CX7g048314 | 7:12,314,457-12,314,663 | + | - | - | - | - | - | Detail |
| CX7g047704 | 7:12,331,477-12,335,538 | + | C1H7g00661 | C2H7g10158 | LOC_Os07g26000 | Os07g0163200 | - | Detail |
| CX7g049677 | 7:12,387,886-12,392,233 | + | C1H7g20476 | C2H7g03650 | - | Os07g0599100 | - | Detail |
| CX7g049480 | 7:12,395,115-12,395,300 | + | - | - | - | - | - | Detail |
| CX7g047100 | 7:12,400,666-12,401,084 | - | - | C2H1g23586 | - | - | - | Detail |
| CX7g049395 | 7:12,402,263-12,402,683 | - | - | - | - | - | - | Detail |
| CX7g048181 | 7:12,457,033-12,457,209 | - | - | - | LOC_Os12g19910 | - | - | Detail |
| CX7g047044 | 7:12,463,951-12,465,403 | + | C1H7g14823 | C2H7g09219 | LOC_Os07g26110 | Os07g0442900 | - | Detail |
| CX7g047359 | 7:12,468,330-12,469,908 | + | - | C2H7g15140 | - | Os07g0554400 | - | Detail |
| CX7g046450 | 7:12,484,076-12,484,312 | - | - | - | - | Os07g0464001 | - | Detail |
| CX7g047352 | 7:12,531,641-12,531,970 | - | - | - | - | Os08g0518600 | - | Detail |
| CX7g049138 | 7:12,549,529-12,549,990 | + | - | - | - | Os07g0542800 | - | Detail |
| CX7g047435 | 7:12,563,210-12,563,470 | - | C1H7g15110 | C2H7g30045 | - | Os07g0186000 | TRXH, trxh, Trx-H, OsTRXh1, OsTrxh1, Os1, OsTrx23, RPP13-1 | Detail |
| CX7g049983 | 7:12,587,013-12,595,072 | - | C1H7g22404 | C2H7g21033 | LOC_Os07g26210 | Os07g0444000 | - | Detail |
| CX7g046951 | 7:12,611,073-12,615,771 | + | C1H7g14611 | C2H7g15268 | LOC_Os07g29820 | Os07g0481400 | - | Detail |
| CX7g048800 | 7:12,620,599-12,626,476 | - | C1H7g17489 | C2H7g16091 | LOC_Os07g26440 | Os07g0445600 | - | Detail |
| CX7g046816 | 7:12,639,837-12,641,365 | + | C1H7g26287 | C2H7g21985 | LOC_Os07g26460 | Os07g0445800 | - | Detail |
| CX7g048464 | 7:12,645,512-12,646,954 | + | C1H7g01225 | C2H7g23639 | LOC_Os07g26480 | Os07g0446000 | - | Detail |