| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H5g08229 | 5:6,918,595-6,922,251 | - | C2H5g25628 | CX5g037652 | - | Os05g0237200 | - | Detail |
| C1H5g23690 | 5:6,924,798-6,927,300 | + | C2H5g10534 | CX5g038998 | LOC_Os05g14750 | Os05g0237400 | OsAGC12 | Detail |
| C1H5g10091 | 5:6,957,418-6,958,414 | - | C2H5g13111 | - | - | - | - | Detail |
| C1H5g07340 | 5:6,999,912-7,001,907 | - | C2H5g22509 | CX5g040601 | LOC_Os05g14820 | Os05g0237800 | OsLHT3 | Detail |
| C1H5g09636 | 5:7,013,535-7,019,663 | + | C2H5g00468 | CX5g037025 | LOC_Os05g14860 | Os05g0238200 | RIP2 | Detail |
| C1H5g11564 | 5:7,033,977-7,048,592 | + | C2H5g16898 | CX5g040390 | LOC_Os05g14930 | Os05g0239400 | - | Detail |
| C1H5g03622 | 5:7,049,320-7,051,488 | - | C2H5g30549 | CX5g040453 | LOC_Os05g14940 | Os05g0583100 | - | Detail |
| C1H5g11311 | 5:7,056,819-7,057,094 | + | C2H5g03459 | CX5g040189 | LOC_Os05g14960 | Os05g0239400 | - | Detail |
| C1H5g27252 | 5:7,062,597-7,065,076 | + | C2H5g29375 | CX5g039809 | LOC_Os05g14970 | Os05g0239400 | - | Detail |
| C1H5g11656 | 5:7,073,958-7,078,882 | - | C2H5g20099 | CX5g037057 | LOC_Os05g15140 | Os05g0241000 | - | Detail |
| C1H5g11532 | 5:7,091,780-7,100,716 | + | C2H5g10118 | CX5g038096 | LOC_Os05g15160 | Os05g0241200 | - | Detail |
| C1H5g03682 | 5:7,107,797-7,109,545 | - | C2H5g15366 | CX5g037086 | LOC_Os05g15180 | Os05g0241400 | - | Detail |
| C1H5g23227 | 5:7,148,353-7,151,570 | - | - | - | LOC_Os05g15280 | Os05g0242400 | - | Detail |
| C1H5g18349 | 5:7,158,656-7,160,985 | - | C2H5g11985 | CX5g037654 | LOC_Os05g15300 | Os05g0242600 | - | Detail |
| C1H5g21164 | 5:7,163,945-7,165,846 | - | - | - | - | - | - | Detail |
| C1H5g23617 | 5:7,179,996-7,180,233 | - | - | - | - | - | - | Detail |
| C1H5g21867 | 5:7,180,809-7,183,243 | - | C2H5g10393 | - | LOC_Os05g15370 | Os05g0243300 | - | Detail |
| C1H5g31263 | 5:7,184,293-7,184,722 | - | - | - | - | - | - | Detail |
| C1H5g28227 | 5:7,185,777-7,189,546 | - | C2H5g10393 | - | LOC_Os05g15370 | Os05g0243300 | - | Detail |
| C1H5g03556 | 5:7,191,476-7,192,242 | - | C2H5g15257 | - | - | - | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g006432 | 1:26,869,510-26,873,725 | + | C1H1g09046 | C2H1g16044 | LOC_Os01g52270 | Os01g0720800 | - | Detail |
| CX1g000877 | 1:26,881,441-26,895,552 | + | C1H1g19609 | C2H1g05952 | LOC_Os01g52330 | Os01g0721300 | - | Detail |
| CX1g001695 | 1:26,907,153-26,910,006 | - | C1H1g16429 | C2H1g03938 | LOC_Os01g52390 | Os01g0721900 | - | Detail |
| CX1g000242 | 1:26,911,331-26,911,480 | - | C1H4g20138 | - | - | - | - | Detail |
| CX1g005554 | 1:26,913,570-26,917,668 | + | C1H1g19540 | C2H1g29212 | LOC_Os01g52400 | Os01g0722100 | - | Detail |
| CX1g004391 | 1:26,925,742-26,927,414 | + | C1H1g14417 | C2H1g15644 | LOC_Os01g52410 | Os01g0722300 | Os2R_MYB14 | Detail |
| CX1g002677 | 1:26,938,638-26,942,076 | + | C1H1g17552 | C2H1g14945 | LOC_Os01g52450 | Os01g0722700 | OsHXK9 | Detail |
| CX1g001570 | 1:26,946,405-26,949,202 | - | C1H1g17968 | C2H1g16107 | LOC_Os01g52470 | Os01g0723000 | - | Detail |
| CX1g004088 | 1:26,951,322-26,953,024 | + | C1H1g00329 | C2H1g09375 | LOC_Os01g52480 | Os01g0723100 | - | Detail |
| CX1g004240 | 1:26,953,804-26,955,294 | - | C1H1g27397 | C2H1g00282 | LOC_Os01g52490 | Os01g0723200 | - | Detail |
| CX1g000428 | 1:26,956,486-26,956,878 | + | - | - | - | - | - | Detail |
| CX1g005860 | 1:26,957,490-26,957,961 | + | - | - | - | - | - | Detail |
| CX1g001850 | 1:26,962,802-26,967,942 | + | C1H1g18013 | C2H1g25823 | LOC_Os01g52500 | Os01g0723400 | NADP-ME2, Os-NADP-ME2, Os-NADP-ME2-2 | Detail |
| CX1g003519 | 1:26,970,216-26,975,514 | + | C1H1g17264 | C2H1g08871 | LOC_Os01g52514 | Os01g0723500 | - | Detail |
| CX1g004209 | 1:26,977,205-26,981,174 | + | C1H1g03740 | C2H1g17638 | LOC_Os01g52530 | Os01g0723600 | - | Detail |
| CX1g005203 | 1:26,982,810-26,983,263 | - | C1H12g09894 | C2H8g28836 | - | - | - | Detail |
| CX1g004680 | 1:26,984,098-26,988,008 | + | C1H1g09315 | C2H1g22241 | LOC_Os01g52540 | Os01g0723700 | - | Detail |
| CX1g004575 | 1:26,988,399-26,994,528 | - | C1H1g17060 | C2H1g23039 | LOC_Os01g52550 | Os01g0723800 | - | Detail |
| CX1g004415 | 1:27,000,702-27,000,872 | + | - | - | - | - | - | Detail |
| CX1g003853 | 1:27,001,679-27,001,900 | + | - | - | LOC_Os01g49630 | Os01g0728000 | - | Detail |