| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H2g24734 | 2:27,612,549-27,617,206 | - | C2H2g15860 | CX2g024558 | LOC_Os02g49150 | Os02g0723300 | - | Detail |
| C1H2g24233 | 2:27,622,626-27,622,877 | + | C2H2g04081 | CX2g024533 | LOC_Os02g49160 | Os02g0723400 | - | Detail |
| C1H2g18213 | 2:27,623,315-27,623,663 | + | C2H2g20481 | CX2g024766 | LOC_Os02g49160 | Os02g0817600 | - | Detail |
| C1H2g16175 | 2:27,625,251-27,629,422 | - | C2H2g22851 | CX2g020430 | LOC_Os02g49180 | Os02g0723600 | - | Detail |
| C1H2g00870 | 2:27,629,824-27,632,226 | + | C2H2g17164 | CX2g020353 | LOC_Os02g49190 | Os02g0723700 | - | Detail |
| C1H2g20021 | 2:27,648,325-27,653,115 | + | C2H2g00357 | CX2g023328 | LOC_Os02g49230 | Os02g0724000 | DTH2, OsCCT08, OsBBX7, OsN | Detail |
| C1H2g09863 | 2:27,657,352-27,661,479 | + | C2H2g14057 | CX2g021258 | LOC_Os02g49260 | Os02g0724500 | - | Detail |
| C1H2g24655 | 2:27,662,296-27,667,448 | + | C2H2g00624 | CX2g020735 | LOC_Os02g49270 | Os02g0724600 | - | Detail |
| C1H2g20212 | 2:27,676,999-27,680,392 | + | C2H2g05357 | CX2g024361 | LOC_Os02g49310 | Os02g0725000 | OsAGC6 | Detail |
| C1H2g12743 | 2:27,682,032-27,685,766 | - | C2H2g11959 | CX2g021752 | LOC_Os02g49320 | Os02g0725100 | - | Detail |
| C1H2g25813 | 2:27,686,562-27,690,996 | + | C2H2g08115 | CX2g019231 | LOC_Os02g49326 | Os02g0725200 | - | Detail |
| C1H2g14119 | 2:27,691,109-27,694,572 | + | C2H2g27630 | CX2g023038 | LOC_Os02g49332 | Os02g0725300 | - | Detail |
| C1H2g16618 | 2:27,698,025-27,698,755 | - | C2H2g22284 | CX2g023830 | LOC_Os02g49350 | Os02g0725500 | - | Detail |
| C1H2g28453 | 2:27,699,390-27,701,648 | + | C2H2g23242 | CX2g023625 | LOC_Os02g49360 | Os02g0725600 | - | Detail |
| C1H2g10199 | 2:27,708,874-27,709,416 | - | C2H2g29177 | CX2g023592 | LOC_Os02g49410 | Os02g0725900 | HAP3K, OsHAP3K/OsNF-YB1, OsHAP3K, OsNF-YB1, nf-yb1, OsLEC1, OsNF-YB-1, NFYB1, OsEnS-41 | Detail |
| C1H2g22692 | 2:27,723,541-27,724,322 | + | - | - | - | - | - | Detail |
| C1H2g05214 | 2:27,736,753-27,740,170 | + | C2H2g05677 | CX2g019656 | LOC_Os02g49450 | Os02g0726400 | - | Detail |
| C1H2g12431 | 2:27,744,500-27,748,577 | + | C2H2g30015 | CX2g023556 | LOC_Os02g49460 | Os02g0726500 | - | Detail |
| C1H2g21836 | 2:27,752,289-27,753,196 | - | C2H2g09813 | CX2g023944 | LOC_Os02g49480 | Os02g0726700 | OsbHLH034 | Detail |
| C1H2g06100 | 2:27,753,386-27,757,067 | - | C2H2g09813 | CX2g023944 | LOC_Os02g49480 | Os02g0726700 | OsbHLH034 | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX7g050099 | 7:10,929,976-10,930,527 | + | C1H7g10880 | C2H7g29173 | LOC_Os07g22680 | Os07g0409500 | - | Detail |
| CX7g047683 | 7:10,939,200-10,944,305 | - | C1H7g15573 | C2H7g02442 | LOC_Os07g22700 | Os07g0409700 | - | Detail |
| CX7g047643 | 7:10,963,117-10,971,305 | - | C1H7g14776 | C2H7g05460 | LOC_Os07g22710 | Os07g0409900 | - | Detail |
| CX7g047493 | 7:10,982,404-10,989,293 | - | C1H7g10366 | C2H7g06667 | LOC_Os07g22720 | Os07g0410100 | - | Detail |
| CX7g047762 | 7:10,991,433-10,991,615 | + | - | - | - | Os07g0616100 | - | Detail |
| CX7g048430 | 7:10,997,534-10,998,205 | - | C1H7g02269 | C2H7g30040 | LOC_Os07g22730 | Os07g0410700 | - | Detail |
| CX7g049827 | 7:11,015,896-11,016,615 | - | C1H7g02269 | C2H7g26113 | LOC_Os07g22770 | Os07g0410700 | - | Detail |
| CX7g049268 | 7:11,020,773-11,020,949 | + | - | - | - | - | - | Detail |
| CX7g048167 | 7:11,022,284-11,022,545 | - | - | - | - | Os07g0467800 | - | Detail |
| CX7g047411 | 7:11,026,332-11,026,523 | - | - | - | - | - | - | Detail |
| CX7g049102 | 7:11,040,801-11,041,064 | - | C1H7g17880 | C2H7g20330 | - | Os07g0411250 | - | Detail |
| CX7g047430 | 7:11,041,860-11,042,114 | + | - | C2H7g19172 | LOC_Os07g22840 | Os07g0411200 | - | Detail |
| CX7g049471 | 7:11,043,607-11,044,982 | - | C1H7g25392 | C2H7g21786 | LOC_Os07g22850 | Os07g0411300 | OsPKS2 | Detail |
| CX7g050392 | 7:11,066,008-11,069,958 | - | C1H7g02385 | C2H7g00323 | LOC_Os07g22930 | Os07g0412100 | GBSSII | Detail |
| CX7g049378 | 7:11,089,267-11,093,365 | + | C1H7g16098 | C2H7g00343 | LOC_Os07g22950 | Os07g0412400 | - | Detail |
| CX7g046574 | 7:11,103,923-11,114,285 | + | C1H7g14122 | C2H7g23690 | LOC_Os07g23110 | Os07g0413700 | OsPARP1.2 | Detail |
| CX7g046554 | 7:11,125,317-11,126,162 | - | - | C2H7g01947 | LOC_Os07g23120 | Os07g0413800 | - | Detail |
| CX7g049143 | 7:11,136,953-11,138,359 | + | C1H7g16311 | C2H7g16215 | LOC_Os07g23150 | Os07g0414000 | - | Detail |
| CX7g048934 | 7:11,156,447-11,157,616 | + | C1H7g14667 | C2H7g08050 | LOC_Os07g23190 | Os07g0414700 | - | Detail |
| CX7g046357 | 7:11,160,237-11,163,856 | - | C1H7g21170 | C2H7g03535 | LOC_Os07g23200 | Os07g0414800 | - | Detail |