| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H4g02251 | 4:29,440,701-29,440,994 | + | C2H4g07923 | CX4g035528 | LOC_Os04g56610 | - | - | Detail |
| C1H4g07215 | 4:29,444,839-29,449,014 | + | C2H4g09519 | CX4g032531 | LOC_Os04g56620 | Os04g0661600 | OsCNX1 | Detail |
| C1H4g05764 | 4:29,449,074-29,456,814 | - | C2H4g30358 | CX4g035527 | LOC_Os04g56630 | Os04g0661700 | - | Detail |
| C1H4g15510 | 4:29,458,517-29,459,700 | - | C2H4g15418 | CX4g036335 | LOC_Os04g56640 | Os04g0661800 | - | Detail |
| C1H4g17837 | 4:29,461,361-29,465,005 | + | C2H4g25643 | CX4g035742 | LOC_Os04g56646 | Os04g0661900 | - | Detail |
| C1H4g07157 | 4:29,465,879-29,467,585 | + | C2H4g06604 | CX4g035185 | LOC_Os04g56654 | - | - | Detail |
| C1H4g06952 | 4:29,468,052-29,469,832 | - | C2H4g27865 | CX4g035521 | LOC_Os04g56670 | Os04g0662100 | - | Detail |
| C1H4g20842 | 4:29,492,711-29,495,836 | - | C2H4g27508 | CX4g032460 | LOC_Os04g56700 | Os04g0662600 | F3H | Detail |
| C1H4g09059 | 4:29,497,177-29,501,717 | - | C2H4g17303 | CX4g034138 | LOC_Os04g56710 | Os04g0662700 | - | Detail |
| C1H4g13098 | 4:29,503,747-29,509,876 | + | C2H4g16716 | CX4g034339 | LOC_Os04g56720 | Os04g0662800 | - | Detail |
| C1H4g29894 | 4:29,510,592-29,512,553 | - | C2H4g14267 | CX4g033445 | LOC_Os04g56730 | Os04g0662900 | - | Detail |
| C1H4g08308 | 4:29,529,386-29,535,319 | + | C2H4g26679 | CX4g032535 | LOC_Os04g56740 | Os04g0663100 | - | Detail |
| C1H4g00285 | 4:29,538,771-29,544,273 | - | C2H4g19453 | CX4g033028 | LOC_Os04g56750 | Os04g0663200 | - | Detail |
| C1H4g10605 | 4:29,546,843-29,547,097 | + | C2H4g23478 | CX4g034501 | - | - | - | Detail |
| C1H4g18316 | 4:29,547,148-29,550,525 | + | C2H4g29870 | CX4g032009 | LOC_Os04g56770 | Os04g0663500 | - | Detail |
| C1H4g08413 | 4:29,551,368-29,552,386 | - | C2H4g27682 | CX4g035961 | LOC_Os04g56780 | Os04g0663600 | WOX1, Os WUS, WUS, OsWOX1, OsWUS, TAB1, TAB1/WUS, MOC3, MOC3/OsWUS | Detail |
| C1H4g06808 | 4:29,560,529-29,567,508 | - | C2H4g25028 | CX4g034853 | LOC_Os04g56790 | Os04g0663700 | - | Detail |
| C1H4g18422 | 4:29,575,958-29,581,942 | - | C2H4g20102 | CX4g033249 | LOC_Os04g56850 | Os04g0664400 | OsARF11, OsMP | Detail |
| C1H4g28826 | 4:29,615,096-29,617,428 | - | C2H4g12473 | CX4g036377 | LOC_Os04g56920 | Os04g0664800 | - | Detail |
| C1H4g05011 | 4:29,618,216-29,620,579 | - | C2H4g26922 | CX4g036377 | LOC_Os04g56930 | Os04g0664900 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002666 | 1:26,691,886-26,693,334 | + | C1H1g26429 | C2H1g06050 | LOC_Os01g51980 | Os01g0717400 | - | Detail |
| CX1g004013 | 1:26,705,649-26,709,954 | + | C1H1g16623 | C2H1g03035 | LOC_Os01g52010 | Os01g0717700 | - | Detail |
| CX1g006728 | 1:26,724,072-26,724,830 | - | - | - | LOC_Os01g51990 | Os01g0717601 | - | Detail |
| CX1g002595 | 1:26,745,951-26,749,316 | - | C1H1g02696 | C2H1g25952 | LOC_Os01g52050 | Os01g0718300 | - | Detail |
| CX1g003113 | 1:26,755,918-26,756,246 | + | C1H1g14248 | C2H1g19010 | LOC_Os01g52060 | Os01g0718500 | - | Detail |
| CX1g004561 | 1:26,761,932-26,766,399 | + | C1H1g23869 | C2H1g25740 | LOC_Os01g52070 | Os01g0718700 | - | Detail |
| CX1g000362 | 1:26,769,378-26,770,412 | - | - | - | LOC_Os01g52090 | Os01g0718900 | - | Detail |
| CX1g002233 | 1:26,780,891-26,781,792 | + | C1H1g28082 | C2H1g24505 | LOC_Os01g52100 | Os01g0719000 | - | Detail |
| CX1g006737 | 1:26,788,629-26,788,859 | - | - | - | - | - | - | Detail |
| CX1g004024 | 1:26,806,170-26,810,883 | + | C1H1g27416 | C2H1g16157 | LOC_Os01g52130 | Os01g0719300 | OsSULTR3;6 | Detail |
| CX1g005204 | 1:26,814,605-26,820,052 | + | C1H1g30372 | C2H1g04500 | LOC_Os01g52140 | Os01g0719400 | - | Detail |
| CX1g003039 | 1:26,825,153-26,827,179 | + | C1H1g18944 | C2H1g02109 | LOC_Os01g52160 | Os01g0719600 | - | Detail |
| CX1g005692 | 1:26,829,768-26,833,364 | + | C1H1g29948 | C2H1g21306 | LOC_Os01g52170 | Os01g0719700 | - | Detail |
| CX1g006540 | 1:26,835,732-26,836,694 | + | C1H1g29733 | C2H1g12535 | LOC_Os01g52180 | Os01g0719900 | - | Detail |
| CX1g004595 | 1:26,837,454-26,838,794 | - | C1H1g20732 | C2H1g22549 | LOC_Os01g52190 | Os01g0720000 | - | Detail |
| CX1g000903 | 1:26,839,364-26,841,224 | - | C1H1g20732 | C2H1g00582 | LOC_Os01g52200 | Os01g0600000 | - | Detail |
| CX1g005572 | 1:26,842,382-26,844,919 | - | C1H1g14278 | C2H1g08396 | LOC_Os01g52214 | Os01g0720300 | - | Detail |
| CX1g005856 | 1:26,846,725-26,847,602 | - | C1H1g07112 | C2H1g02571 | LOC_Os01g52230 | Os01g0720400 | OsACP1 | Detail |
| CX1g006085 | 1:26,853,840-26,863,054 | - | C1H1g31092 | C2H1g27768 | LOC_Os01g52250 | Os01g0720600 | SSIVA, OsSSIVa, SSIV-1 | Detail |
| CX1g001499 | 1:26,864,041-26,864,952 | + | C1H5g17231 | C2H5g28299 | LOC_Os01g52260 | Os01g0720700 | OsSAT1;1 | Detail |