| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H3g21570 | 3:25,741,363-25,746,352 | + | C2H3g05160 | CX3g025253 | LOC_Os03g48270 | Os03g0688300 | CDPK9, OsCDPK9, OsCPK9 | Detail |
| C1H3g15303 | 3:25,761,601-25,789,666 | + | C2H3g19979 | CX3g027485 | LOC_Os03g48300 | Os03g0689100 | - | Detail |
| C1H3g28879 | 3:25,797,199-25,804,299 | + | C2H3g24844 | CX3g027452 | LOC_Os03g48310 | Os03g0689300 | - | Detail |
| C1H3g09435 | 3:25,805,860-25,809,612 | - | C2H3g06110 | CX3g026383 | LOC_Os03g48380 | Os03g0689900 | - | Detail |
| C1H3g04287 | 3:25,811,459-25,813,752 | + | C2H3g14932 | CX3g027552 | LOC_Os03g48390 | Os03g0690000 | - | Detail |
| C1H3g28354 | 3:25,858,813-25,861,993 | - | C2H3g03020 | CX3g028707 | LOC_Os03g48450 | Os03g0690600 | - | Detail |
| C1H3g15398 | 3:25,866,851-25,870,668 | + | C2H3g18585 | - | LOC_Os03g48471 | Os03g0690700 | - | Detail |
| C1H3g11606 | 3:25,900,111-25,902,466 | - | C2H3g25812 | CX3g027625 | LOC_Os03g48480 | Os03g0691400 | - | Detail |
| C1H3g28504 | 3:25,909,216-25,914,267 | + | C2H3g09671 | CX3g027541 | LOC_Os03g48490 | Os03g0691500 | - | Detail |
| C1H3g22244 | 3:25,926,649-25,932,695 | + | C2H3g25810 | CX3g025878 | LOC_Os03g48540 | Os03g0691800 | OsHIPL1 | Detail |
| C1H3g29365 | 3:25,935,730-25,939,266 | + | C2H3g04588 | CX3g028675 | LOC_Os03g48560 | Os03g0692000 | - | Detail |
| C1H3g22267 | 3:25,944,426-25,945,791 | - | C2H3g07015 | CX3g029610 | LOC_Os03g48570 | Os03g0692100 | - | Detail |
| C1H3g08700 | 3:25,952,925-25,954,425 | - | C2H3g07879 | CX3g030062 | LOC_Os03g48590 | Os03g0692300 | - | Detail |
| C1H3g28949 | 3:25,954,962-25,960,357 | - | C2H3g17678 | CX3g026552 | LOC_Os03g48600 | Os03g0692400 | - | Detail |
| C1H3g19100 | 3:25,964,549-25,969,575 | - | C2H3g10834 | CX3g027632 | LOC_Os03g48610 | Os03g0803600 | - | Detail |
| C1H3g17419 | 3:25,974,339-25,976,682 | - | C2H3g04260 | CX3g025938 | LOC_Os03g48626 | Os03g0692700 | - | Detail |
| C1H3g28345 | 3:25,978,712-25,979,248 | - | C2H3g14908 | CX3g031343 | LOC_Os03g48626 | Os03g0692700 | - | Detail |
| C1H3g29633 | 3:25,985,430-25,989,795 | - | C2H3g05966 | CX3g027481 | LOC_Os03g48660 | Os03g0693000 | - | Detail |
| C1H3g04357 | 3:26,012,967-26,013,482 | - | C2H3g10021 | CX3g030139 | LOC_Os03g48710 | Os03g0693400 | - | Detail |
| C1H3g07784 | 3:26,017,832-26,020,916 | + | C2H3g05096 | CX3g027310 | LOC_Os03g48740 | Os03g0693600 | OsIAGT1, OsIAAGLU | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX7g050362 | 7:4,236,327-4,240,488 | + | C1H7g21233 | C2H7g09570 | LOC_Os07g08790 | Os07g0185432 | - | Detail |
| CX7g049699 | 7:4,248,576-4,256,194 | + | C1H7g04399 | C2H7g02745 | LOC_Os07g08810 | Os07g0185700 | - | Detail |
| CX7g048108 | 7:4,260,054-4,263,309 | + | C1H7g17793 | C2H7g29336 | LOC_Os07g08820 | Os07g0185800 | - | Detail |
| CX7g049557 | 7:4,276,756-4,277,818 | + | - | - | - | - | - | Detail |
| CX7g047579 | 7:4,281,316-4,283,123 | - | C1H7g15110 | C2H7g30045 | LOC_Os07g08840 | Os07g0186000 | TRXH, trxh, Trx-H, OsTRXh1, OsTrxh1, Os1, OsTrx23, RPP13-1 | Detail |
| CX7g048745 | 7:4,291,898-4,293,299 | + | C1H7g28388 | C2H7g04806 | LOC_Os07g09870 | Os07g0196900 | - | Detail |
| CX7g046706 | 7:4,298,411-4,300,927 | - | C1H7g16802 | C2H7g25400 | LOC_Os07g08860 | Os07g0186200 | SDRLK-SIK2, SIK2, OsSIK2, YK14 | Detail |
| CX7g047241 | 7:4,305,262-4,317,811 | + | C1H7g06257 | C2H7g00916 | LOC_Os07g08880 | Os07g0186400 | OsSHL1 | Detail |
| CX7g047294 | 7:4,320,518-4,326,283 | + | C1H7g14544 | C2H7g24828 | LOC_Os07g08950 | Os07g0187200 | OsD-LDH2 | Detail |
| CX7g049916 | 7:4,327,374-4,330,007 | - | C1H7g26846 | C2H7g12614 | LOC_Os07g08960 | Os07g0549800 | - | Detail |
| CX7g048853 | 7:4,331,151-4,334,998 | - | C1H7g27888 | C2H7g29149 | LOC_Os07g08970 | Os07g0187400 | - | Detail |
| CX7g047749 | 7:4,339,461-4,343,229 | + | C1H7g28076 | C2H7g29227 | LOC_Os07g09000 | Os07g0187700 | PHF1, OsPHF1, OsWD40-137, OsSEC12 | Detail |
| CX7g048678 | 7:4,353,854-4,355,755 | + | - | C2H7g04045 | LOC_Os07g09010 | Os07g0187900 | - | Detail |
| CX7g050137 | 7:4,360,534-4,370,533 | - | C1H7g18469 | C2H7g16781 | LOC_Os07g09020 | Os07g0188000 | - | Detail |
| CX7g048045 | 7:4,381,661-4,384,213 | + | C1H7g07933 | C2H7g28352 | LOC_Os07g09040 | Os07g0188233 | - | Detail |
| CX7g049512 | 7:4,385,244-4,386,660 | + | C1H7g27796 | C2H7g22140 | LOC_Os07g09040 | Os07g0188266 | - | Detail |
| CX7g048570 | 7:4,389,795-4,393,249 | + | C1H7g22647 | C2H7g15428 | LOC_Os07g09050 | Os07g0188700 | - | Detail |
| CX7g050262 | 7:4,395,644-4,402,367 | + | C1H7g27182 | C2H7g12617 | LOC_Os07g09060 | Os07g0188800 | - | Detail |
| CX7g050068 | 7:4,410,053-4,411,725 | - | C1H7g00471 | C2H7g28551 | LOC_Os07g09120 | - | - | Detail |
| CX7g047473 | 7:4,421,767-4,422,913 | + | C1H7g03181 | C2H7g19166 | LOC_Os07g09140 | Os07g0189700 | - | Detail |