| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H1g10493 | 1:9,425,542-9,428,886 | - | C2H1g01894 | - | LOC_Os01g17080 | - | - | Detail |
| C1H1g09358 | 1:9,429,597-9,431,107 | - | C2H1g23760 | CX1g003482 | LOC_Os01g18620 | Os01g0289900 | - | Detail |
| C1H1g20536 | 1:9,432,113-9,435,734 | - | C2H1g28620 | CX1g007116 | LOC_Os01g18630 | Os01g0290000 | - | Detail |
| C1H1g06449 | 1:9,437,027-9,440,987 | - | C2H1g18032 | CX1g001189 | LOC_Os01g18640 | Os01g0290100 | OsLCD1 | Detail |
| C1H1g00431 | 1:9,445,144-9,449,265 | + | C2H1g16260 | CX1g003793 | LOC_Os01g18660 | Os01g0290600 | OsLCD2, OsCS1 | Detail |
| C1H1g25669 | 1:9,451,061-9,457,278 | - | C2H1g08075 | CX1g004035 | LOC_Os01g18670 | Os01g0290700 | - | Detail |
| C1H1g08871 | 1:9,483,581-9,487,369 | - | C2H1g00537 | CX1g000346 | LOC_Os01g18744 | Os01g0291500 | - | Detail |
| C1H1g01604 | 1:9,556,337-9,560,848 | + | C2H1g10238 | CX1g000147 | LOC_Os01g18800 | Os01g0292200 | - | Detail |
| C1H1g22184 | 1:9,569,781-9,571,127 | + | C2H1g11528 | CX1g001555 | LOC_Os01g18840 | Os01g0292700 | OsIF, OsIFL | Detail |
| C1H1g27588 | 1:9,573,662-9,580,320 | + | C2H1g12039 | - | - | - | - | Detail |
| C1H1g00008 | 1:9,580,724-9,583,867 | - | C2H1g10329 | CX1g003929 | LOC_Os01g18860 | Os01g0293000 | OsSAMS3 | Detail |
| C1H1g09181 | 1:9,589,366-9,590,807 | - | C2H1g25441 | CX1g003845 | LOC_Os01g18870 | Os01g0293100 | OsbHLH142, bHLH142, TIP2 | Detail |
| C1H1g01661 | 1:9,599,626-9,602,565 | - | C2H1g09043 | CX1g004583 | LOC_Os01g18890 | - | - | Detail |
| C1H1g21655 | 1:9,604,939-9,606,211 | - | C2H1g23015 | CX1g006222 | LOC_Os01g18890 | Os01g0327400 | - | Detail |
| C1H1g00275 | 1:9,617,250-9,618,375 | - | C2H1g10639 | CX1g006222 | LOC_Os01g18910 | Os01g0543100 | - | Detail |
| C1H1g13113 | 1:9,620,920-9,621,144 | + | C2H1g22622 | - | - | - | - | Detail |
| C1H1g31670 | 1:9,624,048-9,625,592 | - | C2H1g04900 | CX1g003830 | LOC_Os01g18930 | Os01g0293900 | - | Detail |
| C1H1g26584 | 1:9,636,694-9,637,171 | + | C2H1g16725 | - | - | - | - | Detail |
| C1H1g26555 | 1:9,637,433-9,637,927 | + | C2H1g16725 | - | - | - | - | Detail |
| C1H1g05370 | 1:9,639,481-9,640,626 | - | C2H1g19641 | CX1g004213 | LOC_Os01g18950 | Os01g0294500 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX7g046571 | 7:4,052,128-4,055,102 | - | C1H7g03783 | C2H7g16319 | LOC_Os07g08430 | Os07g0182100 | - | Detail |
| CX7g048076 | 7:4,056,443-4,056,646 | - | - | - | - | Os07g0616100 | - | Detail |
| CX7g046025 | 7:4,060,578-4,063,452 | + | C1H7g22816 | C2H7g13219 | LOC_Os07g08440 | Os07g0182200 | - | Detail |
| CX7g048026 | 7:4,081,863-4,083,532 | - | C1H7g08147 | C2H7g21054 | LOC_Os07g08460 | Os07g0182400 | - | Detail |
| CX7g049865 | 7:4,090,596-4,090,796 | - | - | - | - | - | - | Detail |
| CX7g049402 | 7:4,106,838-4,107,626 | - | C1H7g08163 | C2H7g27628 | - | - | - | Detail |
| CX7g047392 | 7:4,112,008-4,121,264 | + | C1H7g17559 | C2H7g01878 | LOC_Os07g08500 | Os07g0182900 | MET1B, OsMET1b | Detail |
| CX7g050104 | 7:4,149,935-4,151,327 | + | - | C2H7g18951 | LOC_Os07g08510 | Os07g0184200 | - | Detail |
| CX7g049817 | 7:4,158,338-4,161,984 | - | C1H7g01208 | C2H7g05997 | LOC_Os07g08520 | Os07g0183100 | - | Detail |
| CX7g047842 | 7:4,162,628-4,164,100 | + | C1H7g01935 | C2H7g13555 | LOC_Os07g08530 | Os07g0183200 | - | Detail |
| CX7g049514 | 7:4,174,237-4,174,611 | - | - | - | - | - | - | Detail |
| CX7g047133 | 7:4,179,605-4,180,966 | + | C1H7g14715 | C2H7g18951 | LOC_Os07g08650 | Os07g0184200 | - | Detail |
| CX7g049244 | 7:4,183,411-4,184,963 | - | C1H7g03119 | C2H7g11185 | LOC_Os07g08660 | Os03g0798600 | - | Detail |
| CX7g049195 | 7:4,185,404-4,186,367 | + | C1H7g12552 | C2H7g14513 | LOC_Os07g05010 | Os07g0143200 | OsPIF14, OsPIF14β, OsPIF14b, PIL14 | Detail |
| CX7g047879 | 7:4,187,097-4,187,549 | - | - | - | - | - | - | Detail |
| CX7g047415 | 7:4,193,325-4,194,877 | + | C1H7g16015 | C2H7g06349 | LOC_Os07g08710 | Os07g0184800 | OsATH1 | Detail |
| CX7g046514 | 7:4,195,668-4,203,257 | + | C1H7g09330 | C2H7g15936 | LOC_Os07g08729 | Os07g0184900 | - | Detail |
| CX7g048929 | 7:4,206,903-4,209,128 | - | C1H7g00026 | C2H7g05786 | LOC_Os07g08750 | Os07g0185000 | - | Detail |
| CX7g050270 | 7:4,211,577-4,215,429 | - | C1H7g02270 | C2H7g20869 | LOC_Os07g08760 | Os07g0185200 | - | Detail |
| CX7g046271 | 7:4,220,698-4,221,225 | - | - | C2H7g07159 | LOC_Os07g08770 | Os07g0185300 | - | Detail |