| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H5g16481 | 5:18,611,537-18,619,827 | - | C2H5g23688 | CX5g040696 | LOC_Os05g38730 | Os05g0462600 | - | Detail |
| C1H5g01037 | 5:18,622,921-18,623,232 | - | C2H5g09767 | CX5g037421 | LOC_Os05g39050 | Os05g0462700 | - | Detail |
| C1H5g10476 | 5:18,626,978-18,627,268 | - | C2H5g30583 | CX5g040276 | LOC_Os05g38760 | Os05g0462900 | - | Detail |
| C1H5g21054 | 5:18,629,239-18,631,085 | - | C2H5g09732 | CX5g040728 | LOC_Os05g38770 | Os05g0463000 | - | Detail |
| C1H5g22054 | 5:18,637,478-18,639,855 | - | C2H5g02393 | CX5g041103 | LOC_Os05g38790 | Os05g0463300 | - | Detail |
| C1H5g20773 | 5:18,640,575-18,642,729 | + | C2H5g25319 | CX5g038806 | LOC_Os05g38800 | Os05g0463400 | - | Detail |
| C1H5g12108 | 5:18,645,302-18,650,615 | + | C2H5g01133 | CX5g039882 | LOC_Os05g38810 | Os05g0463500 | - | Detail |
| C1H5g15206 | 5:18,652,322-18,654,936 | - | C2H5g16713 | CX5g040078 | LOC_Os05g38820 | Os05g0463800 | HAP3B, OsHAP3B, OsNF-YB-3, NFYB3 | Detail |
| C1H5g26692 | 5:18,657,382-18,663,699 | - | C2H5g05069 | CX5g038352 | LOC_Os05g38830 | Os05g0463900 | - | Detail |
| C1H5g04043 | 5:18,667,859-18,672,129 | + | C2H5g10683 | CX5g038856 | LOC_Os05g38850 | Os05g0464100 | - | Detail |
| C1H5g03107 | 5:18,677,950-18,678,293 | - | C2H5g06217 | - | - | - | - | Detail |
| C1H5g03378 | 5:18,678,680-18,678,931 | - | C2H5g23544 | - | LOC_Os05g38860 | Os05g0464200 | - | Detail |
| C1H5g03501 | 5:18,683,783-18,690,116 | - | C2H5g00642 | CX5g040041 | LOC_Os05g38930 | Os05g0464300 | - | Detail |
| C1H5g22014 | 5:18,690,613-18,691,151 | - | - | - | - | - | - | Detail |
| C1H5g26266 | 5:18,701,358-18,701,600 | + | C2H5g07866 | CX5g037441 | LOC_Os05g38940 | Os05g0465000 | - | Detail |
| C1H5g29457 | 5:18,707,752-18,715,461 | - | C2H5g20572 | CX5g037912 | LOC_Os05g38950 | Os05g0465100 | - | Detail |
| C1H5g08488 | 5:18,726,667-18,727,444 | - | C2H5g24578 | CX5g039928 | LOC_Os05g38960 | Os05g0465400 | - | Detail |
| C1H5g21670 | 5:18,732,643-18,736,941 | + | C2H5g18626 | CX5g037984 | LOC_Os05g38980 | Os05g0465800 | - | Detail |
| C1H5g02280 | 5:18,743,614-18,744,776 | - | C2H5g30441 | CX5g037393 | LOC_Os05g38990 | Os05g0466100 | - | Detail |
| C1H5g22492 | 5:18,748,091-18,750,817 | - | C2H5g26967 | CX5g037000 | LOC_Os05g39000 | Os05g0466200 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g001138 | 1:26,410,873-26,413,350 | - | C1H1g07891 | C2H1g30017 | LOC_Os01g51450 | Os01g0711800 | - | Detail |
| CX1g003170 | 1:26,453,378-26,454,738 | + | C1H1g23448 | C2H1g29576 | LOC_Os01g51510 | Os01g0711900 | - | Detail |
| CX1g004056 | 1:26,455,653-26,455,892 | + | C1H1g23448 | C2H7g06248 | LOC_Os10g03710 | Os06g0139700 | - | Detail |
| CX1g006974 | 1:26,456,831-26,457,178 | + | - | - | - | - | - | Detail |
| CX1g005977 | 1:26,462,998-26,465,013 | - | C1H1g09610 | C2H1g21215 | LOC_Os01g51530 | Os01g0712600 | - | Detail |
| CX1g004505 | 1:26,470,069-26,471,007 | - | - | - | LOC_Os01g51540 | Os01g0712700 | - | Detail |
| CX1g007155 | 1:26,474,235-26,474,483 | - | - | - | - | - | - | Detail |
| CX1g004438 | 1:26,484,402-26,485,678 | + | C1H1g29773 | C2H1g16428 | LOC_Os01g51550 | Os01g0712800 | - | Detail |
| CX1g003877 | 1:26,486,296-26,486,853 | - | C1H1g28237 | C2H1g29576 | LOC_Os01g51490 | Os01g0711900 | - | Detail |
| CX1g004707 | 1:26,491,565-26,492,800 | + | C1H1g05015 | C2H1g17193 | LOC_Os01g51570 | Os01g0713200 | - | Detail |
| CX1g002680 | 1:26,494,600-26,494,758 | + | - | - | - | - | - | Detail |
| CX1g006175 | 1:26,496,086-26,501,054 | + | C1H1g16737 | C2H1g10923 | LOC_Os01g51610 | Os01g0713600 | OsLFL1 | Detail |
| CX1g006183 | 1:26,504,289-26,507,459 | + | C1H1g22175 | C2H1g14637 | LOC_Os01g51620 | Os01g0713800 | - | Detail |
| CX1g003130 | 1:26,511,341-26,532,477 | - | C1H1g05405 | C2H1g19385 | LOC_Os01g51630 | Os01g0713900 | - | Detail |
| CX1g004684 | 1:26,537,342-26,541,291 | - | C1H1g08011 | C2H1g30054 | LOC_Os01g51640 | Os01g0714100 | - | Detail |
| CX1g000231 | 1:26,546,691-26,547,206 | + | C1H1g31544 | C2H1g05393 | LOC_Os01g51670 | Os01g0714600 | - | Detail |
| CX1g001217 | 1:26,548,386-26,548,763 | - | - | - | - | - | - | Detail |
| CX1g003615 | 1:26,553,782-26,555,209 | - | C1H1g17120 | C2H1g26622 | LOC_Os01g51690 | Os01g0714800 | OsWRKY26 | Detail |
| CX1g003805 | 1:26,562,343-26,567,014 | - | C1H1g10774 | C2H1g20321 | LOC_Os01g51700 | Os01g0714900 | - | Detail |
| CX1g000690 | 1:26,568,977-26,571,672 | - | C1H1g01771 | C2H1g05791 | LOC_Os01g51710 | - | - | Detail |