| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H1g02341 | 1:19,552-27,397 | + | C2H1g13015 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C1H1g23301 | 1:34,909-38,077 | + | C2H1g25732 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C1H1g05541 | 1:38,658-42,693 | + | C2H1g24136 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C1H1g18141 | 1:45,137-49,100 | + | C2H1g01770 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C1H1g06702 | 1:49,316-50,669 | + | C2H1g21686 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C1H1g15122 | 1:53,886-58,091 | + | C2H1g03140 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C1H1g26676 | 1:58,983-64,706 | + | C2H1g12741 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C1H1g29605 | 1:68,013-72,703 | + | C2H1g30020 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C1H1g15874 | 1:72,685-75,717 | - | C2H1g01369 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C1H1g31238 | 1:79,440-86,394 | + | C2H1g16597 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C1H1g30351 | 1:88,972-90,382 | + | C2H1g26722 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C1H1g07147 | 1:93,453-96,885 | + | C2H1g16862 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C1H1g23624 | 1:103,904-104,966 | + | C2H1g21224 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C1H1g19237 | 1:106,332-109,626 | + | C2H1g12981 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C1H1g02228 | 1:110,056-112,714 | + | C2H1g13148 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C1H1g19000 | 1:113,782-115,921 | + | C2H1g25133 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| C1H1g20467 | 1:116,248-118,728 | + | C2H1g01047 | CX1g001371 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| C1H1g21121 | 1:119,474-124,658 | + | C2H1g05282 | CX1g006904 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| C1H1g31375 | 1:129,470-130,340 | - | C2H1g27348 | CX1g001497 | LOC_Os01g01340 | Os01g0102900 | LIR1, Lir1 | Detail |
| C1H1g31418 | 1:131,158-133,161 | - | C2H1g25360 | CX1g000859 | LOC_Os01g01350 | Os01g0103000 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g28563 | 1:12,649,509-12,650,534 | - | C1H1g17593 | CX1g005641 | LOC_Os03g29584 | Os03g0409600 | - | Detail |
| C2H1g15011 | 1:12,652,097-12,661,328 | - | C1H1g31563 | CX1g006951 | LOC_Os01g25189 | Os01g0354200 | - | Detail |
| C2H1g21879 | 1:12,670,348-12,674,346 | + | C1H1g07040 | CX1g002132 | LOC_Os01g25240 | Os01g0354700 | - | Detail |
| C2H1g17747 | 1:12,700,271-12,701,344 | + | C1H1g00208 | CX1g002294 | LOC_Os01g25280 | Os01g0355250 | - | Detail |
| C2H1g16578 | 1:12,713,828-12,725,294 | - | C1H1g26223 | CX1g005915 | LOC_Os01g25320 | Os01g0355500 | - | Detail |
| C2H1g07562 | 1:12,726,138-12,729,512 | - | C1H6g30929 | - | - | Os07g0248900 | - | Detail |
| C2H1g00764 | 1:12,730,952-12,731,815 | + | C1H1g04484 | CX1g003598 | - | - | - | Detail |
| C2H1g03083 | 1:12,740,199-12,750,980 | + | C1H1g04297 | CX1g006277 | LOC_Os01g25330 | Os01g0355600 | - | Detail |
| C2H1g27635 | 1:12,791,521-12,796,136 | - | C1H1g19528 | CX1g006683 | LOC_Os01g25370 | Os01g0355900 | OsELS1, OsELS1.3 | Detail |
| C2H1g11601 | 1:12,816,032-12,838,182 | - | C1H1g25404 | CX1g006558 | LOC_Os01g25386 | Os01g0356400 | - | Detail |
| C2H1g19253 | 1:12,865,549-12,871,808 | - | C1H1g30996 | CX1g001500 | LOC_Os01g25440 | Os01g0356500 | - | Detail |
| C2H1g10561 | 1:12,903,821-12,906,003 | + | - | - | - | - | - | Detail |
| C2H1g11897 | 1:13,001,066-13,008,295 | + | C1H1g17978 | CX1g007156 | LOC_Os01g25484 | Os01g0357100 | - | Detail |
| C2H1g07062 | 1:13,008,532-13,009,201 | + | C1H1g12222 | - | LOC_Os01g25500 | Os01g0357200 | - | Detail |
| C2H1g14512 | 1:13,026,899-13,028,339 | - | C1H9g17725 | CX9g058095 | LOC_Os11g30820 | Os11g0504000 | - | Detail |
| C2H1g10094 | 1:13,035,200-13,035,722 | + | C1H1g10812 | CX1g005128 | LOC_Os01g25510 | Os01g0357400 | - | Detail |
| C2H1g25629 | 1:13,036,624-13,037,067 | + | C1H1g18486 | CX1g007156 | LOC_Os01g25484 | Os01g0357500 | - | Detail |
| C2H1g22026 | 1:13,101,097-13,106,067 | + | C1H1g04779 | CX1g000806 | LOC_Os01g25530 | Os01g0357800 | - | Detail |
| C2H1g00631 | 1:13,109,824-13,110,177 | - | C1H1g04222 | CX1g003390 | LOC_Os01g25540 | Os01g0357900 | - | Detail |
| C2H1g06726 | 1:13,115,464-13,115,817 | - | C1H1g19001 | CX1g003390 | LOC_Os01g25560 | Os01g0358100 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX7g050378 | 7:2,997,853-2,998,047 | - | - | - | - | - | - | Detail |
| CX7g049818 | 7:2,999,088-3,000,433 | + | C1H7g10977 | C2H7g04792 | LOC_Os07g06670 | Os07g0160500 | - | Detail |
| CX7g046783 | 7:3,003,722-3,005,089 | + | C1H7g30967 | C2H7g20200 | LOC_Os07g06680 | Os07g0160600 | - | Detail |
| CX7g047372 | 7:3,019,623-3,024,696 | - | C1H7g30885 | C2H7g10241 | LOC_Os07g06710 | Os07g0161000 | - | Detail |
| CX7g049860 | 7:3,031,966-3,035,097 | - | C1H7g06448 | C2H7g04340 | LOC_Os07g06740 | Os07g0161600 | CDPK17, OsCPK17 | Detail |
| CX7g048179 | 7:3,038,209-3,038,736 | + | - | C2H7g01138 | LOC_Os07g06750 | Os07g0161700 | - | Detail |
| CX7g049174 | 7:3,046,698-3,047,273 | + | - | C2H7g01138 | LOC_Os07g06790 | Os07g0161700 | - | Detail |
| CX7g048571 | 7:3,052,838-3,054,590 | - | C1H7g15459 | C2H7g11082 | LOC_Os07g06800 | Os07g0162100 | - | Detail |
| CX7g049835 | 7:3,056,829-3,057,683 | - | - | C2H7g29889 | LOC_Os07g06810 | Os07g0162200 | - | Detail |
| CX7g049055 | 7:3,058,787-3,063,591 | + | C1H7g24248 | C2H7g01313 | LOC_Os07g06820 | Os07g0162300 | - | Detail |
| CX7g047650 | 7:3,085,965-3,087,011 | - | C1H7g03092 | C2H7g23395 | LOC_Os07g06860 | Os07g0162700 | - | Detail |
| CX7g048930 | 7:3,103,372-3,104,364 | - | C1H7g03092 | C2H7g13583 | LOC_Os07g06880 | Os07g0162900 | - | Detail |
| CX7g049022 | 7:3,106,410-3,113,185 | - | C1H7g06281 | C2H7g15677 | LOC_Os07g06890 | Os07g0163000 | OsD-LDH, D-LDH, OsD-LDH-Tr | Detail |
| CX7g046953 | 7:3,116,058-3,118,366 | - | C1H7g03136 | C2H7g11414 | LOC_Os07g06900 | Os07g0163200 | - | Detail |
| CX7g050145 | 7:3,121,093-3,122,471 | - | C1H7g06104 | C2H7g28250 | LOC_Os07g06910 | - | - | Detail |
| CX7g047813 | 7:3,135,503-3,147,330 | + | C1H7g10635 | C2H7g28897 | LOC_Os07g06940 | Os07g0163500 | WP1, OsValRS2, ValRS2 | Detail |
| CX7g047695 | 7:3,155,733-3,166,797 | + | C1H7g30562 | C2H7g16342 | LOC_Os07g06950 | Os07g0163800 | - | Detail |
| CX7g047617 | 7:3,169,373-3,171,325 | - | C1H7g30359 | C2H7g11193 | LOC_Os07g06960 | Os07g0163900 | - | Detail |
| CX7g046501 | 7:3,172,230-3,177,102 | - | C1H7g13389 | C2H7g12803 | LOC_Os07g06970 | Os07g0164000 | WAF1, waf1, waf1-1, waf1-2, HEN1 | Detail |
| CX7g046855 | 7:3,179,011-3,187,717 | - | C1H7g24937 | C2H7g02116 | LOC_Os07g06980 | Os07g0164100 | HDA704 | Detail |