| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H1g02341 | 1:19,552-27,397 | + | C2H1g13015 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C1H1g23301 | 1:34,909-38,077 | + | C2H1g25732 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C1H1g05541 | 1:38,658-42,693 | + | C2H1g24136 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C1H1g18141 | 1:45,137-49,100 | + | C2H1g01770 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C1H1g06702 | 1:49,316-50,669 | + | C2H1g21686 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C1H1g15122 | 1:53,886-58,091 | + | C2H1g03140 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C1H1g26676 | 1:58,983-64,706 | + | C2H1g12741 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C1H1g29605 | 1:68,013-72,703 | + | C2H1g30020 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C1H1g15874 | 1:72,685-75,717 | - | C2H1g01369 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C1H1g31238 | 1:79,440-86,394 | + | C2H1g16597 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C1H1g30351 | 1:88,972-90,382 | + | C2H1g26722 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C1H1g07147 | 1:93,453-96,885 | + | C2H1g16862 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C1H1g23624 | 1:103,904-104,966 | + | C2H1g21224 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C1H1g19237 | 1:106,332-109,626 | + | C2H1g12981 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C1H1g02228 | 1:110,056-112,714 | + | C2H1g13148 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C1H1g19000 | 1:113,782-115,921 | + | C2H1g25133 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| C1H1g20467 | 1:116,248-118,728 | + | C2H1g01047 | CX1g001371 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| C1H1g21121 | 1:119,474-124,658 | + | C2H1g05282 | CX1g006904 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| C1H1g31375 | 1:129,470-130,340 | - | C2H1g27348 | CX1g001497 | LOC_Os01g01340 | Os01g0102900 | LIR1, Lir1 | Detail |
| C1H1g31418 | 1:131,158-133,161 | - | C2H1g25360 | CX1g000859 | LOC_Os01g01350 | Os01g0103000 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H3g07692 | 3:10,454,072-10,455,997 | + | C1H3g25962 | CX3g027267 | LOC_Os03g20790 | Os03g0324300 | - | Detail |
| C2H3g01747 | 3:10,466,684-10,469,905 | - | C1H3g16108 | CX3g029464 | LOC_Os03g20840 | Os03g0324600 | - | Detail |
| C2H3g25599 | 3:10,490,131-10,493,032 | + | C1H3g01814 | CX3g030289 | LOC_Os03g20850 | Os03g0324700 | - | Detail |
| C2H3g14832 | 3:10,493,902-10,497,569 | - | C1H3g29147 | CX3g027309 | LOC_Os03g20860 | Os03g0324800 | - | Detail |
| C2H3g29819 | 3:10,501,580-10,502,551 | + | C1H3g29984 | CX3g029219 | LOC_Os03g20870 | Os03g0324900 | - | Detail |
| C2H3g26179 | 3:10,504,126-10,506,738 | - | C1H3g28159 | CX3g029378 | LOC_Os03g20880 | Os03g0325000 | OsPK7 | Detail |
| C2H3g08884 | 3:10,507,884-10,508,251 | - | C1H3g15612 | - | - | - | - | Detail |
| C2H3g04463 | 3:10,513,587-10,517,847 | - | C1H3g03872 | - | - | Os03g0325400 | - | Detail |
| C2H3g02731 | 3:10,515,682-10,517,957 | + | C1H3g21381 | CX3g030486 | LOC_Os03g20900 | Os03g0325500 | - | Detail |
| C2H3g29011 | 3:10,518,289-10,518,729 | - | - | - | - | - | - | Detail |
| C2H3g21562 | 3:10,522,040-10,525,799 | - | C1H3g24486 | CX3g025637 | LOC_Os03g20910 | Os03g0325600 | WOX6 | Detail |
| C2H3g27706 | 3:10,546,682-10,548,147 | + | C1H3g07872 | CX3g025537 | LOC_Os03g20920 | Os03g0325900 | - | Detail |
| C2H3g11406 | 3:10,549,921-10,552,638 | + | C1H3g04731 | CX3g025537 | LOC_Os03g20940 | Os03g0325900 | - | Detail |
| C2H3g11786 | 3:10,554,945-10,559,206 | - | C1H3g02319 | CX3g030451 | LOC_Os03g20949 | Os03g0326000 | - | Detail |
| C2H3g16867 | 3:10,565,550-10,568,764 | - | C1H3g02400 | CX3g026910 | LOC_Os03g20970 | Os03g0326200 | - | Detail |
| C2H3g17602 | 3:10,575,008-10,579,455 | - | C1H3g09206 | CX3g030054 | LOC_Os03g20980 | Os03g0326300 | - | Detail |
| C2H3g24174 | 3:10,598,353-10,600,014 | - | C1H3g15600 | CX3g025827 | LOC_Os03g21000 | Os03g0326500 | - | Detail |
| C2H3g04323 | 3:10,603,204-10,610,410 | + | C1H3g21481 | CX3g029985 | LOC_Os03g08400 | - | - | Detail |
| C2H3g29428 | 3:10,611,390-10,615,698 | - | C1H3g09196 | CX3g025696 | LOC_Os03g21020 | Os03g0326600 | - | Detail |
| C2H3g08708 | 3:10,621,708-10,623,734 | - | C1H3g00133 | CX3g028720 | LOC_Os03g21030 | Os03g0327100 | OsNAC17 | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX7g050378 | 7:2,997,853-2,998,047 | - | - | - | - | - | - | Detail |
| CX7g049818 | 7:2,999,088-3,000,433 | + | C1H7g10977 | C2H7g04792 | LOC_Os07g06670 | Os07g0160500 | - | Detail |
| CX7g046783 | 7:3,003,722-3,005,089 | + | C1H7g30967 | C2H7g20200 | LOC_Os07g06680 | Os07g0160600 | - | Detail |
| CX7g047372 | 7:3,019,623-3,024,696 | - | C1H7g30885 | C2H7g10241 | LOC_Os07g06710 | Os07g0161000 | - | Detail |
| CX7g049860 | 7:3,031,966-3,035,097 | - | C1H7g06448 | C2H7g04340 | LOC_Os07g06740 | Os07g0161600 | CDPK17, OsCPK17 | Detail |
| CX7g048179 | 7:3,038,209-3,038,736 | + | - | C2H7g01138 | LOC_Os07g06750 | Os07g0161700 | - | Detail |
| CX7g049174 | 7:3,046,698-3,047,273 | + | - | C2H7g01138 | LOC_Os07g06790 | Os07g0161700 | - | Detail |
| CX7g048571 | 7:3,052,838-3,054,590 | - | C1H7g15459 | C2H7g11082 | LOC_Os07g06800 | Os07g0162100 | - | Detail |
| CX7g049835 | 7:3,056,829-3,057,683 | - | - | C2H7g29889 | LOC_Os07g06810 | Os07g0162200 | - | Detail |
| CX7g049055 | 7:3,058,787-3,063,591 | + | C1H7g24248 | C2H7g01313 | LOC_Os07g06820 | Os07g0162300 | - | Detail |
| CX7g047650 | 7:3,085,965-3,087,011 | - | C1H7g03092 | C2H7g23395 | LOC_Os07g06860 | Os07g0162700 | - | Detail |
| CX7g048930 | 7:3,103,372-3,104,364 | - | C1H7g03092 | C2H7g13583 | LOC_Os07g06880 | Os07g0162900 | - | Detail |
| CX7g049022 | 7:3,106,410-3,113,185 | - | C1H7g06281 | C2H7g15677 | LOC_Os07g06890 | Os07g0163000 | OsD-LDH, D-LDH, OsD-LDH-Tr | Detail |
| CX7g046953 | 7:3,116,058-3,118,366 | - | C1H7g03136 | C2H7g11414 | LOC_Os07g06900 | Os07g0163200 | - | Detail |
| CX7g050145 | 7:3,121,093-3,122,471 | - | C1H7g06104 | C2H7g28250 | LOC_Os07g06910 | - | - | Detail |
| CX7g047813 | 7:3,135,503-3,147,330 | + | C1H7g10635 | C2H7g28897 | LOC_Os07g06940 | Os07g0163500 | WP1, OsValRS2, ValRS2 | Detail |
| CX7g047695 | 7:3,155,733-3,166,797 | + | C1H7g30562 | C2H7g16342 | LOC_Os07g06950 | Os07g0163800 | - | Detail |
| CX7g047617 | 7:3,169,373-3,171,325 | - | C1H7g30359 | C2H7g11193 | LOC_Os07g06960 | Os07g0163900 | - | Detail |
| CX7g046501 | 7:3,172,230-3,177,102 | - | C1H7g13389 | C2H7g12803 | LOC_Os07g06970 | Os07g0164000 | WAF1, waf1, waf1-1, waf1-2, HEN1 | Detail |
| CX7g046855 | 7:3,179,011-3,187,717 | - | C1H7g24937 | C2H7g02116 | LOC_Os07g06980 | Os07g0164100 | HDA704 | Detail |