| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H3g13230 | 3:2,418,388-2,421,481 | - | C2H3g27191 | CX3g027575 | LOC_Os03g05520 | Os03g0149200 | - | Detail |
| C1H3g28897 | 3:2,427,257-2,429,725 | - | C2H3g02809 | CX3g026711 | LOC_Os03g05530 | Os03g0149300 | - | Detail |
| C1H3g27908 | 3:2,435,003-2,437,715 | + | C2H3g29786 | CX3g029578 | LOC_Os03g05540 | Os03g0149400 | - | Detail |
| C1H3g00677 | 3:2,440,791-2,441,338 | + | C2H3g29884 | - | - | - | - | Detail |
| C1H3g00185 | 3:2,446,118-2,447,044 | - | C2H3g01040 | CX3g030199 | LOC_Os03g05560 | Os03g0149700 | - | Detail |
| C1H3g00155 | 3:2,453,622-2,454,521 | - | C2H3g29045 | CX3g028233 | LOC_Os03g05570 | Os03g0149800 | - | Detail |
| C1H3g19498 | 3:2,470,321-2,470,746 | + | C2H3g13096 | CX3g030128 | LOC_Os03g05590 | Os03g0150200 | OsAP23 | Detail |
| C1H3g28178 | 3:2,472,952-2,474,577 | + | C2H3g29028 | CX3g030522 | LOC_Os03g05610 | Os03g0150500 | - | Detail |
| C1H3g29432 | 3:2,476,401-2,477,984 | - | C2H3g30077 | CX3g029750 | LOC_Os03g05620 | Os03g0150600 | - | Detail |
| C1H3g22703 | 3:2,480,135-2,480,416 | + | C2H3g00543 | - | LOC_Os03g05630 | Os03g0150700 | - | Detail |
| C1H3g31371 | 3:2,480,559-2,482,194 | + | C2H3g05251 | CX3g024968 | LOC_Os03g05630 | Os03g0150700 | - | Detail |
| C1H3g21603 | 3:2,490,304-2,490,628 | + | C2H3g19570 | - | - | Os03g0150700 | - | Detail |
| C1H3g04203 | 3:2,491,900-2,493,486 | - | C2H3g28429 | CX3g028575 | LOC_Os03g05640 | Os03g0150800 | PT2, OsPT2, PTH1-2, OsPht1;2 | Detail |
| C1H3g13409 | 3:2,498,020-2,503,081 | - | C2H3g24713 | CX3g030168 | LOC_Os03g05660 | Os03g0151100 | - | Detail |
| C1H3g18077 | 3:2,507,699-2,515,990 | + | C2H3g23634 | CX3g028756 | LOC_Os03g05680 | Os03g0151300 | Se14 | Detail |
| C1H3g12618 | 3:2,516,387-2,516,698 | - | C2H3g25123 | CX3g027574 | LOC_Os03g05700 | Os03g0151500 | - | Detail |
| C1H3g18071 | 3:2,518,486-2,519,169 | - | C2H3g19949 | CX3g029524 | LOC_Os03g05710 | Os03g0151600 | - | Detail |
| C1H3g05811 | 3:2,520,194-2,525,967 | + | C2H3g16820 | CX3g027544 | LOC_Os03g05720 | Os03g0151700 | - | Detail |
| C1H3g17815 | 3:2,526,507-2,530,776 | - | C2H3g19649 | CX3g029565 | LOC_Os03g05730 | Os03g0151800 | - | Detail |
| C1H3g19009 | 3:2,531,441-2,533,055 | - | - | - | - | - | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002967 | 1:26,275,366-26,279,000 | + | C1H1g09706 | C2H1g12880 | LOC_Os01g51220 | Os01g0708600 | - | Detail |
| CX1g004777 | 1:26,280,367-26,282,488 | - | C1H1g20984 | C2H1g01487 | LOC_Os01g51230 | Os01g0708700 | - | Detail |
| CX1g006124 | 1:26,287,334-26,291,166 | + | C1H1g24856 | C2H1g11902 | LOC_Os01g51250 | Os01g0708900 | - | Detail |
| CX1g004079 | 1:26,297,362-26,298,893 | + | C1H1g05640 | C2H1g26791 | LOC_Os01g51260 | Os01g0709000 | Os2R_MYB13 | Detail |
| CX1g000983 | 1:26,301,348-26,301,641 | - | - | - | LOC_Os01g51270 | - | - | Detail |
| CX1g006026 | 1:26,304,861-26,307,831 | + | C1H1g15780 | C2H1g16264 | LOC_Os01g51280 | Os01g0709400 | - | Detail |
| CX1g007054 | 1:26,309,382-26,317,472 | - | C1H1g31428 | C2H1g08623 | LOC_Os01g51290 | Os01g0709500 | - | Detail |
| CX1g001712 | 1:26,327,656-26,333,003 | + | C1H1g30106 | C2H1g14661 | LOC_Os01g51300 | Os01g0710000 | OsFVE, OsRBAP1, BGSD-2 | Detail |
| CX1g005112 | 1:26,334,709-26,335,515 | + | C1H5g24700 | C2H5g16790 | LOC_Os01g51310 | Os01g0710100 | - | Detail |
| CX1g005113 | 1:26,339,802-26,341,313 | - | - | - | LOC_Os01g51320 | Os01g0710200 | PAO1, OsPAO1, OsAO4 | Detail |
| CX1g003098 | 1:26,348,367-26,349,420 | - | C1H1g02532 | C2H1g15591 | LOC_Os01g51330 | Os01g0710300 | - | Detail |
| CX1g002067 | 1:26,349,561-26,349,764 | + | - | - | - | Os01g0710250 | - | Detail |
| CX1g004556 | 1:26,356,324-26,358,874 | - | C1H1g13107 | C2H1g15782 | LOC_Os05g30310 | Os01g0852650 | - | Detail |
| CX1g000647 | 1:26,360,438-26,361,808 | - | C1H1g29431 | C2H1g11214 | LOC_Os01g51360 | Os01g0710700 | - | Detail |
| CX1g002177 | 1:26,363,316-26,368,704 | + | C1H1g22136 | C2H1g10466 | LOC_Os01g51380 | Os01g0711000 | - | Detail |
| CX1g004912 | 1:26,375,649-26,379,210 | + | C1H1g20698 | C2H1g20058 | LOC_Os01g51390 | Os01g0711100 | - | Detail |
| CX1g006000 | 1:26,382,701-26,384,756 | + | C1H1g14378 | C2H1g29914 | LOC_Os01g51400 | Os01g0711200 | - | Detail |
| CX1g004328 | 1:26,391,636-26,397,562 | + | C1H1g06125 | C2H1g17094 | LOC_Os01g51410 | Os01g0711400 | - | Detail |
| CX1g005290 | 1:26,398,862-26,401,896 | + | C1H1g22520 | C2H1g13046 | LOC_Os01g51420 | Os01g0711500 | OsCBL10 | Detail |
| CX1g005961 | 1:26,404,259-26,405,755 | + | C1H5g09340 | C2H5g03274 | LOC_Os01g51430 | Os01g0711600 | - | Detail |