| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H3g13873 | 3:3,055,747-3,058,102 | - | C2H3g12377 | CX3g030325 | LOC_Os03g06890 | Os03g0164800 | - | Detail |
| C1H3g21506 | 3:3,060,235-3,060,681 | + | C2H3g23822 | CX3g029502 | - | Os03g0164901 | - | Detail |
| C1H3g29883 | 3:3,064,309-3,074,566 | - | C2H3g07393 | CX3g026349 | LOC_Os03g06900 | Os03g0165000 | TOP3α | Detail |
| C1H3g17508 | 3:3,074,924-3,079,031 | - | C2H3g24120 | CX3g027841 | LOC_Os03g06910 | Os03g0165100 | - | Detail |
| C1H3g30143 | 3:3,079,689-3,081,251 | + | C2H3g16754 | - | LOC_Os03g06920 | - | - | Detail |
| C1H3g17985 | 3:3,081,610-3,087,726 | + | C2H3g12144 | CX3g027850 | LOC_Os03g06920 | Os03g0165266 | OsCHR730, CHR730 | Detail |
| C1H3g21677 | 3:3,088,619-3,090,688 | - | C2H3g20116 | CX3g028821 | LOC_Os03g06930 | Os03g0165300 | - | Detail |
| C1H3g31542 | 3:3,090,808-3,092,668 | - | C2H3g10784 | - | - | - | - | Detail |
| C1H3g17647 | 3:3,096,730-3,097,161 | + | C2H3g07914 | CX3g025536 | - | Os03g0165375 | - | Detail |
| C1H3g30263 | 3:3,100,263-3,106,732 | - | C2H3g24716 | CX3g028153 | LOC_Os03g06940 | Os03g0165400 | - | Detail |
| C1H3g12191 | 3:3,114,985-3,126,106 | - | C2H3g14394 | CX3g027771 | LOC_Os03g06950 | Os03g0165600 | - | Detail |
| C1H3g13896 | 3:3,127,649-3,129,733 | + | C2H3g15746 | CX3g030842 | LOC_Os03g06960 | Os03g0165800 | - | Detail |
| C1H3g22228 | 3:3,131,396-3,134,167 | - | C2H3g22818 | CX3g028104 | LOC_Os03g06970 | Os03g0165900 | - | Detail |
| C1H3g16704 | 3:3,134,464-3,134,784 | - | C2H3g18146 | - | - | - | - | Detail |
| C1H3g06157 | 3:3,137,781-3,141,091 | - | C2H3g11279 | CX3g026438 | LOC_Os03g06980 | Os03g0166000 | - | Detail |
| C1H3g11602 | 3:3,143,315-3,145,448 | + | C2H3g30212 | CX3g025523 | LOC_Os03g07000 | Os03g0166100 | - | Detail |
| C1H3g09271 | 3:3,146,171-3,148,053 | + | C2H3g23098 | CX3g027208 | LOC_Os03g07000 | Os03g0166200 | - | Detail |
| C1H3g01458 | 3:3,148,520-3,152,294 | - | C2H3g15876 | CX3g027399 | LOC_Os03g07060 | Os03g0166600 | - | Detail |
| C1H3g04033 | 3:3,159,274-3,164,955 | + | C2H3g12538 | CX3g030094 | LOC_Os03g07080 | Os03g0166800 | - | Detail |
| C1H3g18965 | 3:3,167,474-3,169,003 | + | C2H3g19555 | CX3g030196 | LOC_Os03g07100 | Os03g0167000 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX7g049302 | 7:1,977,697-1,979,145 | - | C1H7g16311 | C2H7g14480 | LOC_Os07g04970 | Os07g0142700 | - | Detail |
| CX7g048918 | 7:1,981,675-1,984,338 | + | C1H7g23730 | C2H7g13386 | LOC_Os07g04980 | Os07g0118800 | - | Detail |
| CX7g046865 | 7:1,985,065-1,987,958 | + | C1H7g23399 | C2H7g27275 | LOC_Os07g04990 | Os07g0142900 | - | Detail |
| CX7g048357 | 7:1,990,991-1,994,352 | + | C1H7g28462 | C2H7g27275 | LOC_Os07g05000 | Os07g0143000 | - | Detail |
| CX7g048872 | 7:2,000,215-2,001,957 | + | C1H7g12552 | C2H7g14513 | LOC_Os07g05010 | Os07g0143200 | OsPIF14, OsPIF14β, OsPIF14b, PIL14 | Detail |
| CX7g046854 | 7:2,011,207-2,013,737 | - | C1H7g09908 | C2H7g20668 | - | - | - | Detail |
| CX7g048569 | 7:2,015,734-2,017,401 | - | C1H7g25943 | C2H7g24721 | LOC_Os07g05040 | Os07g0143600 | - | Detail |
| CX7g048216 | 7:2,018,473-2,023,621 | - | C1H7g01640 | C2H7g00608 | LOC_Os07g05050 | Os07g0143700 | OsRH53 | Detail |
| CX7g050400 | 7:2,028,353-2,028,645 | + | C1H7g27141 | C2H4g24787 | - | - | - | Detail |
| CX7g049966 | 7:2,033,262-2,034,910 | + | C1H7g10624 | C2H7g04210 | LOC_Os07g05110 | Os07g0144500 | - | Detail |
| CX7g049847 | 7:2,035,474-2,037,350 | - | C1H7g23348 | C2H7g16275 | LOC_Os07g05120 | - | - | Detail |
| CX7g046422 | 7:2,051,264-2,051,761 | - | C1H7g10880 | C2H7g23169 | LOC_Os07g05150 | Os07g0144900 | - | Detail |
| CX7g046504 | 7:2,052,302-2,052,826 | + | C1H7g09042 | C2H7g08843 | LOC_Os07g05160 | Os07g0144900 | - | Detail |
| CX7g048631 | 7:2,059,389-2,059,895 | + | C1H7g09042 | C2H7g23169 | LOC_Os07g05180 | Os07g0144900 | - | Detail |
| CX7g049168 | 7:2,060,405-2,060,662 | + | - | - | - | - | - | Detail |
| CX7g049183 | 7:2,062,489-2,066,805 | - | C1H7g17569 | C2H7g13737 | LOC_Os07g05190 | Os07g0145400 | - | Detail |
| CX7g049547 | 7:2,082,197-2,082,910 | - | C1H7g14394 | C2H7g08515 | LOC_Os07g05260 | Os07g0146300 | - | Detail |
| CX7g048306 | 7:2,103,152-2,103,649 | - | - | - | - | - | - | Detail |
| CX7g048696 | 7:2,135,077-2,136,168 | + | C1H7g21360 | C2H7g29915 | LOC_Os07g05360 | Os07g0147500 | - | Detail |
| CX7g050355 | 7:2,137,672-2,138,621 | + | C1H7g08457 | C2H7g26151 | LOC_Os07g05365 | Os07g0147550 | - | Detail |