| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H3g15008 | 3:25,380,391-25,382,918 | - | C2H3g05036 | CX3g027869 | LOC_Os03g47730 | Os03g0680700 | - | Detail |
| C1H3g11695 | 3:25,386,485-25,387,041 | - | - | - | LOC_Os03g47740 | - | - | Detail |
| C1H3g03715 | 3:25,387,095-25,393,085 | - | C2H3g11834 | CX3g029265 | LOC_Os03g47740 | Os03g0680800 | - | Detail |
| C1H3g12498 | 3:25,415,597-25,437,897 | + | C2H3g10722 | CX3g028531 | LOC_Os03g47760 | Os03g0681300 | - | Detail |
| C1H3g24402 | 3:25,438,866-25,443,544 | - | C2H3g08660 | CX3g025611 | LOC_Os03g47770 | Os03g0681400 | - | Detail |
| C1H3g21990 | 3:25,446,337-25,450,295 | + | C2H3g06154 | CX3g025413 | LOC_Os03g47780 | Os03g0681700 | OsWD40-81, OsLST8, LST8 | Detail |
| C1H3g03027 | 3:25,451,805-25,457,119 | - | C2H3g08631 | CX3g030716 | LOC_Os03g47790 | Os03g0681800 | - | Detail |
| C1H3g11959 | 3:25,468,236-25,472,054 | - | C2H3g29470 | CX3g030858 | LOC_Os03g47800 | Os03g0681900 | - | Detail |
| C1H3g05321 | 3:25,472,617-25,475,994 | - | C2H3g25886 | CX3g025153 | - | - | - | Detail |
| C1H3g19741 | 3:25,488,746-25,496,735 | - | C2H3g14407 | CX3g029458 | LOC_Os03g47820 | Os03g0682200 | - | Detail |
| C1H3g01296 | 3:25,514,058-25,515,446 | + | C2H3g07169 | CX3g029210 | LOC_Os03g47860 | Os03g0682900 | OsACT | Detail |
| C1H3g26805 | 3:25,522,398-25,523,171 | - | C2H3g28221 | CX3g030162 | LOC_Os03g47890 | Os03g0683200 | - | Detail |
| C1H3g30362 | 3:25,527,135-25,528,459 | - | C2H3g09855 | CX3g027958 | LOC_Os03g47896 | Os03g0683300 | - | Detail |
| C1H3g01955 | 3:25,534,161-25,551,193 | - | C2H3g01457 | - | - | Os03g0683816 | - | Detail |
| C1H3g30757 | 3:25,534,374-25,546,485 | + | C2H3g15375 | CX3g026415 | LOC_Os03g47930 | Os03g0138600 | - | Detail |
| C1H3g31733 | 3:25,547,703-25,552,026 | + | C2H3g26490 | CX3g030593 | LOC_Os03g47940 | Os03g0683800 | - | Detail |
| C1H3g20424 | 3:25,553,856-25,571,344 | - | C2H3g09499 | CX3g028427 | LOC_Os03g47949 | Os03g0683900 | - | Detail |
| C1H3g09827 | 3:25,573,493-25,579,102 | - | C2H3g10030 | CX3g029806 | LOC_Os03g47980 | Os03g0684100 | - | Detail |
| C1H3g13222 | 3:25,580,028-25,582,775 | + | C2H3g27014 | CX3g027899 | LOC_Os03g47990 | Os03g0684300 | - | Detail |
| C1H3g18256 | 3:25,584,274-25,590,281 | + | C2H3g26230 | CX3g029805 | LOC_Os03g48000 | Os03g0684400 | OsMGT3 | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX7g049270 | 7:790,749-796,301 | + | C1H7g29824 | C2H7g24967 | LOC_Os07g02440 | Os07g0115300 | - | Detail |
| CX7g050040 | 7:798,775-801,405 | + | C1H7g12893 | C2H7g21396 | LOC_Os07g02450 | Os07g0468500 | - | Detail |
| CX7g050102 | 7:801,848-801,997 | - | - | - | - | - | - | Detail |
| CX7g048567 | 7:806,801-807,200 | + | C1H7g17438 | C2H7g05636 | LOC_Os07g02460 | Os07g0115500 | - | Detail |
| CX7g046201 | 7:812,508-815,295 | + | C1H7g26660 | C2H7g24825 | LOC_Os07g02470 | Os07g0115600 | - | Detail |
| CX7g048843 | 7:853,237-854,521 | - | C1H7g05374 | C2H7g00995 | LOC_Os07g02540 | Os07g0116600 | HHC7 | Detail |
| CX7g050253 | 7:859,289-859,450 | + | C1H1g21326 | C2H1g26585 | LOC_Os01g11900 | Os01g0218032 | ROS1A, ROS1a, OsROS1, TA2 | Detail |
| CX7g049855 | 7:897,151-901,475 | - | C1H7g19098 | C2H7g25039 | LOC_Os07g02620 | Os07g0117300 | - | Detail |
| CX7g047078 | 7:916,801-917,082 | - | - | - | - | - | - | Detail |
| CX7g049253 | 7:917,681-918,109 | + | C1H11g17235 | C2H7g27503 | LOC_Os07g02690 | Os07g0118200 | - | Detail |
| CX7g048680 | 7:920,226-920,654 | + | C1H11g17235 | C2H7g06906 | LOC_Os07g02870 | Os07g0120000 | - | Detail |
| CX7g050222 | 7:922,162-925,303 | + | C1H7g16877 | C2H7g30126 | LOC_Os07g02710 | Os07g0118300 | - | Detail |
| CX7g048086 | 7:928,052-928,219 | - | - | - | - | - | - | Detail |
| CX7g048565 | 7:930,750-935,011 | + | C1H7g01332 | C2H7g02504 | LOC_Os07g02760 | Os07g0118800 | - | Detail |
| CX7g046747 | 7:935,669-938,580 | + | C1H7g00656 | C2H7g05412 | LOC_Os07g02770 | Os07g0118900 | - | Detail |
| CX7g046286 | 7:939,839-944,793 | - | C1H7g19978 | C2H7g29366 | LOC_Os07g02780 | Os07g0119000 | OsMAPKKK11 | Detail |
| CX7g047815 | 7:947,205-949,578 | + | C1H7g01105 | C2H7g13887 | LOC_Os07g02790 | Os07g0119100 | - | Detail |
| CX7g046639 | 7:960,817-960,993 | - | - | - | - | - | - | Detail |
| CX7g049284 | 7:969,432-970,940 | + | C1H7g31353 | C2H7g30652 | LOC_Os07g02800 | Os07g0119300 | - | Detail |
| CX7g047130 | 7:978,237-980,880 | + | C1H7g07353 | C2H7g30256 | LOC_Os07g02810 | Os07g0119400 | OsAAO3 | Detail |