| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H1g02341 | 1:19,552-27,397 | + | C2H1g13015 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C1H1g23301 | 1:34,909-38,077 | + | C2H1g25732 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C1H1g05541 | 1:38,658-42,693 | + | C2H1g24136 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C1H1g18141 | 1:45,137-49,100 | + | C2H1g01770 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C1H1g06702 | 1:49,316-50,669 | + | C2H1g21686 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C1H1g15122 | 1:53,886-58,091 | + | C2H1g03140 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C1H1g26676 | 1:58,983-64,706 | + | C2H1g12741 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C1H1g29605 | 1:68,013-72,703 | + | C2H1g30020 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C1H1g15874 | 1:72,685-75,717 | - | C2H1g01369 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C1H1g31238 | 1:79,440-86,394 | + | C2H1g16597 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C1H1g30351 | 1:88,972-90,382 | + | C2H1g26722 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C1H1g07147 | 1:93,453-96,885 | + | C2H1g16862 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C1H1g23624 | 1:103,904-104,966 | + | C2H1g21224 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C1H1g19237 | 1:106,332-109,626 | + | C2H1g12981 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C1H1g02228 | 1:110,056-112,714 | + | C2H1g13148 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C1H1g19000 | 1:113,782-115,921 | + | C2H1g25133 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| C1H1g20467 | 1:116,248-118,728 | + | C2H1g01047 | CX1g001371 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| C1H1g21121 | 1:119,474-124,658 | + | C2H1g05282 | CX1g006904 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| C1H1g31375 | 1:129,470-130,340 | - | C2H1g27348 | CX1g001497 | LOC_Os01g01340 | Os01g0102900 | LIR1, Lir1 | Detail |
| C1H1g31418 | 1:131,158-133,161 | - | C2H1g25360 | CX1g000859 | LOC_Os01g01350 | Os01g0103000 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H3g01980 | 3:28,769,869-28,772,490 | - | C1H3g09903 | CX3g026536 | LOC_Os03g55320 | Os03g0761100 | - | Detail |
| C2H3g06672 | 3:28,774,318-28,777,794 | - | C1H3g13690 | CX3g026537 | LOC_Os03g55330 | Os03g0761200 | - | Detail |
| C2H3g12099 | 3:28,793,894-28,798,830 | + | C1H3g30024 | CX3g028991 | LOC_Os03g55360 | Os03g0761700 | - | Detail |
| C2H3g13639 | 3:28,801,419-28,805,273 | + | C1H3g06743 | CX3g030441 | LOC_Os03g55380 | Os03g0761900 | - | Detail |
| C2H3g22708 | 3:28,807,938-28,813,613 | - | C1H3g04781 | CX3g027555 | LOC_Os03g55389 | Os03g0762000 | HD6, Hd6, Hd6(t)*, OsCKA2, OSCKA2 | Detail |
| C2H3g06124 | 3:28,815,348-28,816,132 | - | C1H3g13239 | CX3g029923 | LOC_Os03g55400 | Os03g0762100 | - | Detail |
| C2H3g03334 | 3:28,824,236-28,825,529 | + | C1H3g15054 | CX3g027273 | LOC_Os03g55410 | Os03g0762300 | - | Detail |
| C2H3g28441 | 3:28,829,093-28,831,783 | + | C1H3g30848 | CX3g028085 | LOC_Os03g55420 | Os03g0762400 | - | Detail |
| C2H3g23566 | 3:28,836,777-28,837,357 | + | C1H3g21651 | CX3g025152 | LOC_Os07g02460 | Os03g0206400 | - | Detail |
| C2H3g15621 | 3:28,837,367-28,837,765 | + | - | - | LOC_Os03g55430 | Os03g0762500 | - | Detail |
| C2H3g21236 | 3:28,841,343-28,843,221 | - | C1H3g30412 | CX3g028267 | LOC_Os03g55450 | Os03g0762700 | - | Detail |
| C2H3g28904 | 3:28,851,569-28,855,786 | + | C1H3g31602 | CX3g027974 | LOC_Os03g55470 | Os03g0762900 | - | Detail |
| C2H3g20218 | 3:28,861,702-28,866,046 | + | C1H3g12054 | CX3g028419 | LOC_Os03g55490 | Os03g0763000 | - | Detail |
| C2H3g15832 | 3:28,890,305-28,892,884 | + | C1H3g10528 | CX3g027285 | LOC_Os03g55530 | Os03g0764000 | GSE3 | Detail |
| C2H3g26472 | 3:28,905,764-28,912,939 | - | C1H3g07992 | CX3g027062 | LOC_Os03g55560 | Os03g0764300 | OstMAPKKK5 | Detail |
| C2H3g25717 | 3:28,919,148-28,926,059 | + | C1H3g08783 | CX3g027539 | LOC_Os03g55570 | Os03g0764550 | - | Detail |
| C2H3g13812 | 3:28,935,297-28,937,445 | + | C1H3g17565 | CX3g029766 | LOC_Os03g55590 | Os03g0764600 | OsHHO3 | Detail |
| C2H3g16680 | 3:28,942,582-28,947,621 | + | C1H3g10682 | CX3g030582 | LOC_Os03g55600 | Os03g0764800 | SAPK8, OsSAPK8 | Detail |
| C2H3g01981 | 3:28,965,418-28,968,051 | + | C1H3g29826 | CX3g027424 | LOC_Os03g55620 | Os03g0765000 | - | Detail |
| C2H3g10671 | 3:28,969,609-28,972,477 | + | C1H3g07713 | CX3g029687 | LOC_Os03g55630 | Os03g0765100 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX6g041595 | 6:26,817,024-26,819,444 | - | C1H6g27289 | C2H6g29259 | LOC_Os06g50880 | Os06g0724500 | - | Detail |
| CX6g043078 | 6:26,821,683-26,823,469 | + | C1H6g23028 | C2H6g08226 | LOC_Os06g50890 | Os06g0724600 | - | Detail |
| CX6g044716 | 6:26,840,895-26,842,183 | + | C1H6g19535 | C2H6g28694 | LOC_Os06g50900 | Os06g0724800 | - | Detail |
| CX6g045960 | 6:26,845,582-26,857,286 | - | C1H6g31802 | C2H6g09528 | LOC_Os06g50910 | Os06g0724700 | - | Detail |
| CX6g044048 | 6:26,858,427-26,864,048 | + | C1H6g29296 | C2H6g06943 | LOC_Os06g50920 | Os06g0724900 | ILA1, ILA1, ila1 | Detail |
| CX6g043661 | 6:26,866,822-26,868,789 | - | C1H6g17411 | C2H6g18391 | LOC_Os06g50930 | Os06g0725000 | - | Detail |
| CX6g041988 | 6:26,871,140-26,872,838 | - | C1H6g31536 | C2H6g10468 | LOC_Os06g50940 | Os06g0725100 | - | Detail |
| CX6g041172 | 6:26,894,955-26,896,517 | - | C1H6g28861 | C2H6g04166 | LOC_Os06g50950 | Os06g0725200 | - | Detail |
| CX6g045938 | 6:26,905,563-26,906,416 | + | C1H6g13269 | C2H6g27831 | LOC_Os06g50960 | Os06g0725300 | - | Detail |
| CX6g045200 | 6:26,907,925-26,908,155 | + | - | C2H10g24376 | - | - | - | Detail |
| CX6g043176 | 6:26,911,905-26,912,054 | + | - | - | - | - | - | Detail |
| CX6g041265 | 6:26,916,656-26,917,513 | + | C1H6g12966 | C2H6g09308 | LOC_Os06g50980 | Os06g0725500 | - | Detail |
| CX6g042621 | 6:26,921,923-26,922,780 | + | C1H6g01695 | C2H6g29060 | LOC_Os06g50990 | Os06g0725500 | - | Detail |
| CX6g043319 | 6:26,928,302-26,929,168 | + | C1H6g28085 | C2H6g09308 | LOC_Os06g51000 | Os06g0725700 | - | Detail |
| CX6g045734 | 6:26,932,806-26,933,672 | + | C1H6g29458 | C2H6g09308 | LOC_Os06g51010 | Os06g0725800 | - | Detail |
| CX6g041414 | 6:26,934,497-26,937,955 | - | C1H6g06936 | C2H6g22428 | LOC_Os06g51029 | Os06g0725900 | - | Detail |
| CX6g045756 | 6:26,950,574-26,951,041 | - | C1H6g12337 | C2H4g13957 | LOC_Os03g31160 | Os03g0425100 | - | Detail |
| CX6g044328 | 6:26,953,612-26,954,571 | + | C1H6g04681 | C2H6g29881 | LOC_Os06g51050 | Os06g0726100 | OsCHI11, Cht3 | Detail |
| CX6g044443 | 6:26,958,014-26,958,988 | + | C1H6g06919 | C2H6g09226 | LOC_Os06g51060 | Os06g0726200 | - | Detail |
| CX6g044880 | 6:26,961,546-26,962,415 | - | C1H6g05334 | C2H6g16361 | LOC_Os06g51070 | Os06g0726300 | NAC95, ONAC095, ONAC95 | Detail |