| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H3g15751 | 3:5,984,629-5,989,313 | - | C2H3g22097 | CX3g027410 | LOC_Os03g12680 | Os03g0227900 | - | Detail |
| C1H3g25563 | 3:6,001,188-6,002,188 | - | C2H3g16447 | CX3g026331 | LOC_Os03g12700 | Os03g0228200 | - | Detail |
| C1H3g16232 | 3:6,005,101-6,007,425 | + | C2H3g25355 | CX3g026814 | LOC_Os03g12710 | Os03g0228400 | - | Detail |
| C1H3g10418 | 3:6,009,448-6,009,668 | - | - | CX3g025837 | - | - | - | Detail |
| C1H3g23512 | 3:6,032,384-6,035,395 | + | C2H3g13539 | CX3g031224 | LOC_Os03g12720 | Os03g0228500 | - | Detail |
| C1H3g12564 | 3:6,049,802-6,053,627 | - | C2H3g13159 | CX3g027642 | LOC_Os03g12730 | Os03g0228800 | OsBRR1 | Detail |
| C1H3g01094 | 3:6,064,388-6,065,508 | - | C2H3g13186 | CX3g028683 | LOC_Os03g12760 | Os03g0229100 | - | Detail |
| C1H3g22208 | 3:6,091,929-6,094,842 | - | C2H3g28054 | CX3g029657 | LOC_Os03g12790 | Os03g0229500 | GS3.1 | Detail |
| C1H3g02835 | 3:6,102,839-6,108,243 | - | C2H3g29189 | CX3g031223 | - | Os03g0229575 | - | Detail |
| C1H3g05308 | 3:6,110,884-6,114,139 | - | C2H3g27019 | CX3g025778 | LOC_Os03g12810 | Os03g0229600 | - | Detail |
| C1H3g12624 | 3:6,115,043-6,115,252 | - | C2H3g25429 | - | - | - | - | Detail |
| C1H3g02612 | 3:6,134,243-6,136,920 | + | C2H3g25845 | CX3g029726 | LOC_Os03g12820 | Os03g0230300 | - | Detail |
| C1H3g04395 | 3:6,138,850-6,139,179 | - | C2H3g14412 | CX3g025129 | - | - | - | Detail |
| C1H3g30651 | 3:6,141,034-6,146,413 | + | C2H3g19351 | CX3g029537 | LOC_Os03g12840 | Os03g0230500 | DSM3, DSM3/OsITPK2, OsITL1, OsITPK2 | Detail |
| C1H3g20871 | 3:6,174,292-6,175,674 | + | C2H3g08152 | CX3g028083 | LOC_Os03g12860 | Os03g0231150 | - | Detail |
| C1H3g09365 | 3:6,197,066-6,199,458 | + | C2H3g24795 | CX3g026479 | LOC_Os03g12890 | Os03g0231600 | OsBCAT2 | Detail |
| C1H3g15109 | 3:6,202,066-6,205,181 | - | C2H3g23260 | CX3g029672 | LOC_Os03g12900 | Os03g0231700 | - | Detail |
| C1H3g26830 | 3:6,206,150-6,211,305 | - | C2H3g25882 | CX3g029672 | LOC_Os03g12910 | Os03g0231800 | - | Detail |
| C1H3g13331 | 3:6,228,148-6,231,008 | - | C2H3g00833 | CX3g027611 | LOC_Os03g12930 | Os03g0231900 | - | Detail |
| C1H3g17846 | 3:6,234,174-6,236,190 | - | C2H3g09594 | CX3g030152 | LOC_Os03g12940 | Os03g0231950 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX6g041502 | 6:23,804,642-23,806,368 | - | C1H6g11988 | C2H6g13796 | LOC_Os06g45330 | Os06g0663600 | - | Detail |
| CX6g045945 | 6:23,808,222-23,809,256 | - | C1H6g24851 | C2H6g08478 | LOC_Os06g45340 | Os06g0663800 | - | Detail |
| CX6g044060 | 6:23,819,442-23,823,405 | + | C1H6g25709 | C2H6g14212 | LOC_Os06g45350 | Os06g0663900 | - | Detail |
| CX6g042626 | 6:23,823,877-23,824,206 | - | - | - | - | Os06g0664000 | - | Detail |
| CX6g045376 | 6:23,825,502-23,825,957 | + | C1H6g04386 | C2H6g28732 | - | - | - | Detail |
| CX6g042007 | 6:23,826,076-23,826,507 | + | - | C2H6g14654 | - | - | - | Detail |
| CX6g044758 | 6:23,827,727-23,835,630 | - | C1H6g08767 | C2H6g24826 | LOC_Os06g45360 | Os06g0664100 | - | Detail |
| CX6g042887 | 6:23,837,106-23,839,157 | - | C1H6g30945 | C2H6g00789 | LOC_Os06g45370 | Os06g0664200 | - | Detail |
| CX6g042503 | 6:23,849,987-23,856,303 | + | C1H6g08586 | C2H6g19748 | LOC_Os06g45380 | Os06g0664300 | OsVSR6 | Detail |
| CX6g044595 | 6:23,857,525-23,860,720 | - | C1H6g03094 | C2H6g01763 | LOC_Os06g45390 | Os06g0664400 | - | Detail |
| CX6g045983 | 6:23,869,439-23,872,546 | + | C1H6g02505 | C2H6g14833 | LOC_Os06g45410 | Os06g0664800 | - | Detail |
| CX6g041356 | 6:23,878,910-23,882,185 | + | C1H6g15108 | C2H6g00067 | LOC_Os06g45430 | Os06g0665000 | - | Detail |
| CX6g041675 | 6:23,883,018-23,884,008 | - | C1H6g06152 | C2H6g17880 | LOC_Os06g45440 | Os06g0665100 | - | Detail |
| CX6g045958 | 6:23,885,882-23,887,129 | - | C1H6g22830 | C2H6g03277 | LOC_Os06g45450 | Os06g0665200 | - | Detail |
| CX6g044365 | 6:23,890,767-23,890,994 | + | - | - | - | - | - | Detail |
| CX6g045292 | 6:23,893,709-23,895,020 | - | C1H6g16253 | C2H6g02226 | LOC_Os06g45460 | Os06g0665400 | APO1, apo1(t), apo1, SCM2, SCM2/APO1, OsFbox321, Os_F0393 | Detail |
| CX6g045511 | 6:23,907,875-23,911,348 | + | C1H5g01573 | C2H7g04084 | - | - | - | Detail |
| CX6g042079 | 6:23,911,929-23,916,037 | - | C1H6g09339 | C2H6g26324 | LOC_Os06g45480 | Os06g0665500 | OsAAH | Detail |
| CX6g044663 | 6:23,917,228-23,917,467 | - | - | - | - | - | - | Detail |
| CX6g045639 | 6:23,924,922-23,930,954 | - | C1H6g29065 | C2H6g03492 | LOC_Os06g45500 | Os06g0665800 | HMA9, OsHMA9 ,oshma9-1, oshma9-2, HMA9 | Detail |