| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H1g02341 | 1:19,552-27,397 | + | C2H1g13015 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C1H1g23301 | 1:34,909-38,077 | + | C2H1g25732 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C1H1g05541 | 1:38,658-42,693 | + | C2H1g24136 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C1H1g18141 | 1:45,137-49,100 | + | C2H1g01770 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C1H1g06702 | 1:49,316-50,669 | + | C2H1g21686 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C1H1g15122 | 1:53,886-58,091 | + | C2H1g03140 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C1H1g26676 | 1:58,983-64,706 | + | C2H1g12741 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C1H1g29605 | 1:68,013-72,703 | + | C2H1g30020 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C1H1g15874 | 1:72,685-75,717 | - | C2H1g01369 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C1H1g31238 | 1:79,440-86,394 | + | C2H1g16597 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C1H1g30351 | 1:88,972-90,382 | + | C2H1g26722 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C1H1g07147 | 1:93,453-96,885 | + | C2H1g16862 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C1H1g23624 | 1:103,904-104,966 | + | C2H1g21224 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C1H1g19237 | 1:106,332-109,626 | + | C2H1g12981 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C1H1g02228 | 1:110,056-112,714 | + | C2H1g13148 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C1H1g19000 | 1:113,782-115,921 | + | C2H1g25133 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| C1H1g20467 | 1:116,248-118,728 | + | C2H1g01047 | CX1g001371 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| C1H1g21121 | 1:119,474-124,658 | + | C2H1g05282 | CX1g006904 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| C1H1g31375 | 1:129,470-130,340 | - | C2H1g27348 | CX1g001497 | LOC_Os01g01340 | Os01g0102900 | LIR1, Lir1 | Detail |
| C1H1g31418 | 1:131,158-133,161 | - | C2H1g25360 | CX1g000859 | LOC_Os01g01350 | Os01g0103000 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H5g00595 | 5:20,255,544-20,257,753 | + | C1H5g12778 | CX5g040097 | LOC_Os05g41010 | Os05g0489100 | - | Detail |
| C2H5g23469 | 5:20,260,244-20,261,460 | - | C1H5g22216 | - | LOC_Os05g41030 | Os05g0489200 | - | Detail |
| C2H5g15924 | 5:20,261,918-20,262,334 | - | C1H5g05615 | CX5g037795 | LOC_Os05g41030 | Os05g0489200 | - | Detail |
| C2H5g27372 | 5:20,265,804-20,269,075 | - | C1H5g29364 | CX5g037436 | LOC_Os05g41060 | Os05g0489600 | - | Detail |
| C2H5g09500 | 5:20,272,302-20,274,674 | + | C1H5g11382 | CX5g037252 | LOC_Os05g41070 | Os05g0489700 | HBF1, OsbZIP42 | Detail |
| C2H5g01943 | 5:20,276,334-20,276,600 | + | C1H5g00326 | CX5g039059 | - | Os05g0489750 | - | Detail |
| C2H5g05322 | 5:20,277,356-20,279,584 | - | C1H5g30374 | CX5g039132 | LOC_Os05g41080 | Os05g0489800 | OsCENH3 | Detail |
| C2H5g07453 | 5:20,280,953-20,284,731 | - | C1H5g17926 | CX5g038078 | LOC_Os05g41090 | Os05g0489900 | DMI3, OsDMI3, OsCCaMK1, OsCCaMK, OsCCAMK, CCAMK | Detail |
| C2H5g20839 | 5:20,285,634-20,287,613 | - | C1H5g27285 | CX5g037785 | LOC_Os05g41100 | Os05g0490000 | - | Detail |
| C2H5g02383 | 5:20,287,853-20,289,688 | + | C1H5g14042 | CX5g039362 | LOC_Os05g41110 | Os05g0490100 | - | Detail |
| C2H5g16191 | 5:20,290,572-20,296,794 | + | C1H5g00258 | CX5g038500 | LOC_Os05g41120 | Os05g0490200 | - | Detail |
| C2H5g27761 | 5:20,299,690-20,300,745 | - | C1H5g17707 | CX5g037621 | LOC_Os05g41130 | Os05g0490300 | - | Detail |
| C2H5g07017 | 5:20,308,897-20,315,355 | - | C1H5g17579 | CX5g039490 | LOC_Os05g41150 | Os05g0490400 | - | Detail |
| C2H5g07145 | 5:20,316,323-20,318,633 | - | C1H5g31086 | CX5g038921 | LOC_Os05g41166 | Os05g0490600 | CSA2 | Detail |
| C2H5g25171 | 5:20,322,902-20,328,726 | - | C1H5g16631 | CX5g037848 | LOC_Os05g41172 | Os05g0490700 | - | Detail |
| C2H5g06467 | 5:20,329,937-20,332,796 | - | C1H5g03177 | CX5g037157 | LOC_Os05g41180 | Os05g0490800 | - | Detail |
| C2H5g15902 | 5:20,336,078-20,336,922 | - | C1H5g04917 | - | LOC_Os05g41190 | Os05g0490900 | - | Detail |
| C2H5g03482 | 5:20,339,026-20,339,554 | - | C1H5g01262 | CX5g040781 | LOC_Os05g41200 | Os05g0491000 | OsCML9 | Detail |
| C2H5g27006 | 5:20,340,490-20,343,661 | - | C1H5g17633 | CX5g040781 | LOC_Os05g41210 | Os05g0491100 | - | Detail |
| C2H5g10562 | 5:20,347,115-20,349,730 | - | C1H5g22455 | CX5g040781 | LOC_Os05g41220 | Os05g0491200 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g005199 | 1:25,589,235-25,592,687 | + | C1H1g10906 | C2H1g01798 | LOC_Os01g49920 | Os01g0694100 | - | Detail |
| CX1g005889 | 1:25,595,636-25,599,266 | - | C1H1g14019 | C2H1g29437 | LOC_Os01g49930 | Os01g0694200 | - | Detail |
| CX1g000910 | 1:25,603,897-25,618,136 | - | C1H1g11575 | C2H1g02878 | LOC_Os01g49940 | Os01g0694300 | - | Detail |
| CX1g001874 | 1:25,622,772-25,623,026 | - | - | - | - | Os01g0694500 | - | Detail |
| CX1g003379 | 1:25,627,365-25,632,629 | + | C1H1g23983 | C2H1g12436 | LOC_Os01g50010 | Os01g0694900 | - | Detail |
| CX1g006314 | 1:25,638,133-25,642,372 | + | C1H1g09854 | C2H1g09448 | LOC_Os01g50032 | Os01g0695100 | OsPEAMT1 | Detail |
| CX1g000495 | 1:25,644,959-25,649,080 | + | C1H1g24840 | C2H1g20938 | LOC_Os01g50040 | Os01g0695200 | - | Detail |
| CX1g005052 | 1:25,649,852-25,652,902 | - | C1H1g15839 | C2H1g12268 | LOC_Os01g50050 | Os01g0695300 | OsFPS3 | Detail |
| CX1g001238 | 1:25,653,758-25,656,449 | - | C1H1g09427 | C2H1g10720 | LOC_Os01g50060 | Os01g0695600 | - | Detail |
| CX1g000682 | 1:25,667,566-25,678,540 | + | C1H1g28535 | C2H1g19234 | LOC_Os01g50080 | Os01g0695800 | - | Detail |
| CX1g004640 | 1:25,679,244-25,679,729 | + | C1H1g24452 | C2H1g29650 | - | - | - | Detail |
| CX1g004821 | 1:25,680,590-25,687,063 | - | C1H1g20551 | C2H1g26297 | LOC_Os01g50100 | Os01g0695800 | - | Detail |
| CX1g006689 | 1:25,687,910-25,688,140 | + | - | - | - | - | - | Detail |
| CX1g003608 | 1:25,697,071-25,698,283 | + | C1H1g28063 | C2H1g18904 | LOC_Os01g50110 | Os01g0695900 | Os2R_MYB11 | Detail |
| CX1g004393 | 1:25,699,752-25,701,440 | + | C1H1g21196 | C2H1g25152 | LOC_Os01g50120 | Os01g0696000 | - | Detail |
| CX1g001262 | 1:25,701,847-25,703,443 | - | C1H1g00928 | C2H1g29550 | - | Os01g0696100 | - | Detail |
| CX1g000640 | 1:25,714,780-25,714,932 | - | - | - | - | Os01g0696500 | - | Detail |
| CX1g003854 | 1:25,717,036-25,723,726 | + | C1H1g28913 | C2H1g29725 | LOC_Os01g50160 | Os01g0695800 | - | Detail |
| CX1g004441 | 1:25,730,658-25,731,830 | + | C1H1g05607 | C2H1g22549 | LOC_Os01g50170 | Os01g0696800 | - | Detail |
| CX1g003045 | 1:25,735,563-25,736,951 | - | C1H1g17596 | C2H1g27577 | LOC_Os01g50200 | Os01g0697100 | - | Detail |