| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H1g02341 | 1:19,552-27,397 | + | C2H1g13015 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C1H1g23301 | 1:34,909-38,077 | + | C2H1g25732 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C1H1g05541 | 1:38,658-42,693 | + | C2H1g24136 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C1H1g18141 | 1:45,137-49,100 | + | C2H1g01770 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C1H1g06702 | 1:49,316-50,669 | + | C2H1g21686 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C1H1g15122 | 1:53,886-58,091 | + | C2H1g03140 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C1H1g26676 | 1:58,983-64,706 | + | C2H1g12741 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C1H1g29605 | 1:68,013-72,703 | + | C2H1g30020 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C1H1g15874 | 1:72,685-75,717 | - | C2H1g01369 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C1H1g31238 | 1:79,440-86,394 | + | C2H1g16597 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C1H1g30351 | 1:88,972-90,382 | + | C2H1g26722 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C1H1g07147 | 1:93,453-96,885 | + | C2H1g16862 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C1H1g23624 | 1:103,904-104,966 | + | C2H1g21224 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C1H1g19237 | 1:106,332-109,626 | + | C2H1g12981 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C1H1g02228 | 1:110,056-112,714 | + | C2H1g13148 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C1H1g19000 | 1:113,782-115,921 | + | C2H1g25133 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| C1H1g20467 | 1:116,248-118,728 | + | C2H1g01047 | CX1g001371 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| C1H1g21121 | 1:119,474-124,658 | + | C2H1g05282 | CX1g006904 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| C1H1g31375 | 1:129,470-130,340 | - | C2H1g27348 | CX1g001497 | LOC_Os01g01340 | Os01g0102900 | LIR1, Lir1 | Detail |
| C1H1g31418 | 1:131,158-133,161 | - | C2H1g25360 | CX1g000859 | LOC_Os01g01350 | Os01g0103000 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H3g19190 | 3:25,554,570-25,561,711 | + | C1H3g13231 | CX3g031047 | LOC_Os03g59910 | Os03g0565900 | - | Detail |
| C2H3g17803 | 3:25,570,498-25,573,219 | + | C1H3g02064 | CX3g029768 | LOC_Os03g49050 | Os03g0109300 | - | Detail |
| C2H3g15504 | 3:25,581,060-25,584,596 | + | C1H3g16785 | CX3g028722 | LOC_Os03g49126 | Os03g0697833 | - | Detail |
| C2H3g27379 | 3:25,587,707-25,592,889 | - | C1H3g27645 | CX3g029661 | LOC_Os03g49140 | Os03g0698350 | - | Detail |
| C2H3g22127 | 3:25,599,797-25,603,130 | - | C1H3g05637 | CX1g002153 | LOC_Os03g63870 | Os03g0429900 | - | Detail |
| C2H3g20960 | 3:25,616,219-25,619,400 | + | C1H3g28768 | CX3g030702 | LOC_Os03g49150 | Os03g0698500 | - | Detail |
| C2H3g00073 | 3:25,627,418-25,631,109 | + | C1H3g04379 | CX3g025989 | LOC_Os03g49170 | Os03g0698800 | - | Detail |
| C2H3g03385 | 3:25,632,477-25,636,312 | - | C1H3g08733 | CX3g029194 | LOC_Os03g49180 | Os03g0698900 | - | Detail |
| C2H3g06339 | 3:25,639,724-25,644,239 | - | C1H3g14380 | CX3g027765 | LOC_Os03g49200 | Os03g0699100 | - | Detail |
| C2H3g19400 | 3:25,647,107-25,653,178 | + | C1H3g06128 | CX3g025779 | LOC_Os03g49210 | Os03g0699200 | - | Detail |
| C2H3g05406 | 3:25,653,677-25,656,852 | + | C1H3g23737 | CX3g029958 | LOC_Os03g49220 | Os03g0699300 | - | Detail |
| C2H3g18347 | 3:25,657,907-25,660,725 | - | C1H3g16011 | CX3g028209 | LOC_Os03g49230 | Os03g0699400 | - | Detail |
| C2H3g00103 | 3:25,661,782-25,664,015 | + | C1H3g30535 | CX3g029586 | LOC_Os03g49250 | Os03g0699600 | - | Detail |
| C2H3g17436 | 3:25,665,813-25,669,803 | + | C1H3g05707 | CX3g027914 | LOC_Os03g49260 | Os03g0699700 | Osr9-LOX1 | Detail |
| C2H3g05028 | 3:25,695,027-25,700,308 | + | C1H3g00070 | CX3g026782 | LOC_Os03g49350 | Os03g0700400 | LOX-3 | Detail |
| C2H3g00658 | 3:25,714,832-25,721,118 | + | C1H3g28644 | CX3g026204 | LOC_Os03g49380 | Os03g0700700 | - | Detail |
| C2H3g05258 | 3:25,724,525-25,732,125 | + | C1H3g00971 | CX3g025372 | LOC_Os03g49400 | Os03g0700800 | - | Detail |
| C2H3g25047 | 3:25,736,986-25,745,311 | + | C1H3g06905 | CX3g029939 | LOC_Os03g49420 | Os03g0701000 | - | Detail |
| C2H3g16404 | 3:25,747,030-25,749,728 | - | C1H3g16586 | CX3g025036 | LOC_Os03g49430 | Os03g0701100 | - | Detail |
| C2H3g29777 | 3:25,750,626-25,753,803 | + | C1H3g02438 | CX3g031052 | LOC_Os03g49440 | Os03g0701200 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g005047 | 1:2,072,547-2,072,876 | - | C1H1g12945 | C2H1g20272 | LOC_Os01g06520 | Os01g0149700 | KINt1 | Detail |
| CX1g003624 | 1:2,078,822-2,079,019 | - | - | C2H1g14098 | - | - | - | Detail |
| CX1g000648 | 1:2,082,745-2,084,171 | - | - | - | - | - | - | Detail |
| CX1g003888 | 1:2,106,381-2,106,950 | + | C1H1g29078 | C2H1g24298 | LOC_Os01g05250 | Os01g0146200 | - | Detail |
| CX1g000323 | 1:2,166,179-2,170,094 | + | C1H1g18605 | C2H1g08018 | LOC_Os01g05420 | Os01g0147200 | - | Detail |
| CX1g005533 | 1:2,171,659-2,172,408 | - | - | - | - | Os01g0147250 | - | Detail |
| CX1g001325 | 1:2,171,941-2,174,602 | + | C1H1g08705 | C2H1g25573 | LOC_Os01g05430 | Os01g0147300 | - | Detail |
| CX1g006491 | 1:2,180,893-2,181,051 | + | - | - | - | - | - | Detail |
| CX1g003030 | 1:2,191,343-2,194,905 | - | C1H1g11928 | C2H1g25353 | LOC_Os01g05470 | Os01g0147700 | - | Detail |
| CX1g005120 | 1:2,202,349-2,205,877 | - | C1H1g17304 | C2H1g29480 | LOC_Os01g05480 | Os01g0147800 | - | Detail |
| CX1g006525 | 1:2,207,260-2,210,546 | - | C1H1g08404 | C2H1g30066 | LOC_Os01g05490 | Os01g0147900 | OsTPI1, OsTPI1.1 | Detail |
| CX1g001423 | 1:2,216,430-2,228,307 | + | C1H1g03903 | C2H1g25150 | LOC_Os01g05500 | Os01g0148000 | - | Detail |
| CX1g005368 | 1:2,238,442-2,242,036 | - | - | C2H1g10498 | LOC_Os01g05620 | Os01g0149500 | PIT, Pit, Pit(K59), Pit(Npb), Pi-t, PitNpb, PitK59 | Detail |
| CX1g005739 | 1:2,243,300-2,243,761 | + | C1H1g09766 | C2H1g18971 | LOC_Os01g05630 | Os01g0149600 | H2B | Detail |
| CX1g006643 | 1:2,245,123-2,248,470 | - | C1H1g01144 | C2H1g06791 | LOC_Os01g05640 | Os01g0149700 | KINt1 | Detail |
| CX1g006502 | 1:2,256,318-2,260,166 | - | C1H1g17924 | C2H1g25044 | LOC_Os01g05660 | Os01g0149900 | - | Detail |
| CX1g002286 | 1:2,265,565-2,268,998 | - | C1H1g30008 | C2H1g00511 | LOC_Os01g05670 | Os01g0150000 | - | Detail |
| CX1g004862 | 1:2,269,565-2,270,509 | - | - | - | - | - | - | Detail |
| CX1g000079 | 1:2,271,984-2,274,513 | + | C1H1g15806 | C2H1g17834 | LOC_Os01g05680 | Os01g0150100 | OsPGGT I-β | Detail |
| CX1g000733 | 1:2,305,907-2,307,621 | + | - | C2H1g16876 | LOC_Os01g05790 | Os01g0151100 | - | Detail |