| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H1g02341 | 1:19,552-27,397 | + | C2H1g13015 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C1H1g23301 | 1:34,909-38,077 | + | C2H1g25732 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C1H1g05541 | 1:38,658-42,693 | + | C2H1g24136 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C1H1g18141 | 1:45,137-49,100 | + | C2H1g01770 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C1H1g06702 | 1:49,316-50,669 | + | C2H1g21686 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C1H1g15122 | 1:53,886-58,091 | + | C2H1g03140 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C1H1g26676 | 1:58,983-64,706 | + | C2H1g12741 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C1H1g29605 | 1:68,013-72,703 | + | C2H1g30020 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C1H1g15874 | 1:72,685-75,717 | - | C2H1g01369 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C1H1g31238 | 1:79,440-86,394 | + | C2H1g16597 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C1H1g30351 | 1:88,972-90,382 | + | C2H1g26722 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C1H1g07147 | 1:93,453-96,885 | + | C2H1g16862 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C1H1g23624 | 1:103,904-104,966 | + | C2H1g21224 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C1H1g19237 | 1:106,332-109,626 | + | C2H1g12981 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C1H1g02228 | 1:110,056-112,714 | + | C2H1g13148 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C1H1g19000 | 1:113,782-115,921 | + | C2H1g25133 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| C1H1g20467 | 1:116,248-118,728 | + | C2H1g01047 | CX1g001371 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| C1H1g21121 | 1:119,474-124,658 | + | C2H1g05282 | CX1g006904 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| C1H1g31375 | 1:129,470-130,340 | - | C2H1g27348 | CX1g001497 | LOC_Os01g01340 | Os01g0102900 | LIR1, Lir1 | Detail |
| C1H1g31418 | 1:131,158-133,161 | - | C2H1g25360 | CX1g000859 | LOC_Os01g01350 | Os01g0103000 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H3g23265 | 3:1,235,832-1,236,371 | + | C1H3g10403 | CX3g027007 | LOC_Os03g03440 | Os03g0125900 | - | Detail |
| C2H3g03318 | 3:1,237,434-1,242,083 | - | C1H3g12126 | CX3g030160 | LOC_Os03g03450 | Os03g0126000 | - | Detail |
| C2H3g01117 | 3:1,245,855-1,250,733 | - | C1H3g18852 | CX3g027762 | LOC_Os03g03460 | Os03g0126100 | - | Detail |
| C2H3g09637 | 3:1,252,295-1,259,222 | - | C1H3g19764 | CX3g026825 | LOC_Os03g03470 | Os03g0126300 | - | Detail |
| C2H3g01245 | 3:1,260,350-1,261,060 | - | C1H3g31582 | CX3g030498 | LOC_Os03g03480 | Os03g0126450 | - | Detail |
| C2H3g24889 | 3:1,263,662-1,264,351 | + | C1H3g28463 | CX3g031250 | LOC_Os03g03490 | Os03g0126600 | - | Detail |
| C2H3g03559 | 3:1,266,510-1,267,383 | + | C1H3g02888 | CX3g030815 | LOC_Os03g03500 | Os03g0126700 | - | Detail |
| C2H3g24408 | 3:1,270,166-1,273,929 | - | C1H3g13225 | CX3g025902 | LOC_Os03g03510 | Os03g0126800 | CIPK9 | Detail |
| C2H3g27173 | 3:1,277,534-1,277,890 | - | C1H3g17944 | CX3g025296 | LOC_Os03g03520 | Os03g0126900 | - | Detail |
| C2H3g18981 | 3:1,280,309-1,281,951 | - | C1H3g26030 | CX3g025913 | LOC_Os03g03530 | Os03g0127000 | - | Detail |
| C2H3g03780 | 3:1,282,147-1,282,497 | + | C1H3g10455 | - | - | - | - | Detail |
| C2H3g10836 | 3:1,288,174-1,290,490 | - | C1H3g07061 | CX3g025702 | LOC_Os03g03540 | Os03g0624600 | - | Detail |
| C2H3g05840 | 3:1,311,541-1,313,944 | + | C1H3g08724 | CX3g026687 | LOC_Os03g03550 | Os03g0127500 | - | Detail |
| C2H3g22731 | 3:1,314,269-1,319,253 | - | C1H3g30951 | CX3g027794 | LOC_Os03g03560 | Os03g0127600 | - | Detail |
| C2H3g10932 | 3:1,322,038-1,325,387 | + | C1H3g04194 | CX3g029550 | LOC_Os03g03570 | Os03g0127700 | - | Detail |
| C2H3g19343 | 3:1,328,504-1,336,058 | - | C1H3g21101 | CX3g028222 | LOC_Os03g03590 | Os03g0127900 | - | Detail |
| C2H3g04515 | 3:1,339,764-1,340,969 | + | C1H3g15997 | CX3g029732 | LOC_Os03g03600 | Os03g0128000 | - | Detail |
| C2H3g21656 | 3:1,342,440-1,363,000 | - | C1H3g11304 | CX3g027243 | LOC_Os03g03610 | Os03g0128100 | - | Detail |
| C2H3g11243 | 3:1,368,193-1,368,760 | - | C1H3g22245 | CX3g025297 | LOC_Os03g03630 | Os03g0128300 | - | Detail |
| C2H3g19615 | 3:1,370,201-1,371,413 | - | C1H3g27628 | CX3g029085 | LOC_Os03g03640 | Os03g0128400 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g005047 | 1:2,072,547-2,072,876 | - | C1H1g12945 | C2H1g20272 | LOC_Os01g06520 | Os01g0149700 | KINt1 | Detail |
| CX1g003624 | 1:2,078,822-2,079,019 | - | - | C2H1g14098 | - | - | - | Detail |
| CX1g000648 | 1:2,082,745-2,084,171 | - | - | - | - | - | - | Detail |
| CX1g003888 | 1:2,106,381-2,106,950 | + | C1H1g29078 | C2H1g24298 | LOC_Os01g05250 | Os01g0146200 | - | Detail |
| CX1g000323 | 1:2,166,179-2,170,094 | + | C1H1g18605 | C2H1g08018 | LOC_Os01g05420 | Os01g0147200 | - | Detail |
| CX1g005533 | 1:2,171,659-2,172,408 | - | - | - | - | Os01g0147250 | - | Detail |
| CX1g001325 | 1:2,171,941-2,174,602 | + | C1H1g08705 | C2H1g25573 | LOC_Os01g05430 | Os01g0147300 | - | Detail |
| CX1g006491 | 1:2,180,893-2,181,051 | + | - | - | - | - | - | Detail |
| CX1g003030 | 1:2,191,343-2,194,905 | - | C1H1g11928 | C2H1g25353 | LOC_Os01g05470 | Os01g0147700 | - | Detail |
| CX1g005120 | 1:2,202,349-2,205,877 | - | C1H1g17304 | C2H1g29480 | LOC_Os01g05480 | Os01g0147800 | - | Detail |
| CX1g006525 | 1:2,207,260-2,210,546 | - | C1H1g08404 | C2H1g30066 | LOC_Os01g05490 | Os01g0147900 | OsTPI1, OsTPI1.1 | Detail |
| CX1g001423 | 1:2,216,430-2,228,307 | + | C1H1g03903 | C2H1g25150 | LOC_Os01g05500 | Os01g0148000 | - | Detail |
| CX1g005368 | 1:2,238,442-2,242,036 | - | - | C2H1g10498 | LOC_Os01g05620 | Os01g0149500 | PIT, Pit, Pit(K59), Pit(Npb), Pi-t, PitNpb, PitK59 | Detail |
| CX1g005739 | 1:2,243,300-2,243,761 | + | C1H1g09766 | C2H1g18971 | LOC_Os01g05630 | Os01g0149600 | H2B | Detail |
| CX1g006643 | 1:2,245,123-2,248,470 | - | C1H1g01144 | C2H1g06791 | LOC_Os01g05640 | Os01g0149700 | KINt1 | Detail |
| CX1g006502 | 1:2,256,318-2,260,166 | - | C1H1g17924 | C2H1g25044 | LOC_Os01g05660 | Os01g0149900 | - | Detail |
| CX1g002286 | 1:2,265,565-2,268,998 | - | C1H1g30008 | C2H1g00511 | LOC_Os01g05670 | Os01g0150000 | - | Detail |
| CX1g004862 | 1:2,269,565-2,270,509 | - | - | - | - | - | - | Detail |
| CX1g000079 | 1:2,271,984-2,274,513 | + | C1H1g15806 | C2H1g17834 | LOC_Os01g05680 | Os01g0150100 | OsPGGT I-β | Detail |
| CX1g000733 | 1:2,305,907-2,307,621 | + | - | C2H1g16876 | LOC_Os01g05790 | Os01g0151100 | - | Detail |