| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H4g09842 | 4:19,965,873-19,967,760 | + | C2H4g10950 | CX4g031630 | LOC_Os04g38600 | Os04g0459500 | - | Detail |
| C1H4g22419 | 4:19,968,451-19,970,778 | - | C2H4g21093 | CX4g035534 | LOC_Os04g38610 | Os04g0459600 | - | Detail |
| C1H4g02624 | 4:19,972,528-19,975,843 | - | C2H4g29769 | CX4g031435 | LOC_Os04g38620 | Os04g0459700 | - | Detail |
| C1H4g06613 | 4:19,981,869-19,985,349 | - | C2H4g23801 | CX4g032546 | LOC_Os04g38630 | Os04g0459800 | - | Detail |
| C1H4g08376 | 4:19,988,929-19,994,340 | + | C2H4g04441 | CX4g034165 | LOC_Os04g38640 | Os04g0459900 | - | Detail |
| C1H4g19139 | 4:20,001,646-20,003,575 | + | C2H4g25768 | CX4g035386 | LOC_Os04g38670 | Os04g0460200 | OsATL14, Bh4 | Detail |
| C1H4g00598 | 4:20,019,678-20,021,871 | + | C2H4g01029 | CX4g036106 | LOC_Os04g38680 | Os04g0460300 | - | Detail |
| C1H4g20972 | 4:20,026,350-20,027,141 | + | C2H4g15731 | CX4g033651 | LOC_Os04g38690 | Os04g0460400 | CASP5, OsCASP5 | Detail |
| C1H4g26714 | 4:20,029,626-20,032,112 | + | C2H4g29420 | CX4g035215 | LOC_Os04g38700 | Os04g0460500 | - | Detail |
| C1H4g00856 | 4:20,038,253-20,039,873 | + | C2H4g09182 | CX4g035794 | LOC_Os04g38720 | Os04g0460600 | NAC2, OsNAC2, ONAC004, ONAC4, ONAC034, ONAC34, ONAC058, ONAC58, OMTN2, Ostil1, OsNAC2/ONAC004, OsORE1.2 | Detail |
| C1H4g10275 | 4:20,046,098-20,049,027 | - | C2H4g21139 | CX4g031747 | LOC_Os04g38730 | - | - | Detail |
| C1H4g16192 | 4:20,070,094-20,073,348 | + | C2H4g04335 | CX4g033056 | LOC_Os04g38740 | Os04g0461000 | Os2R_MYB43 | Detail |
| C1H4g01178 | 4:20,073,898-20,075,514 | + | C2H4g17531 | CX4g035604 | LOC_Os04g38750 | Os04g0461100 | - | Detail |
| C1H4g10260 | 4:20,086,206-20,094,834 | + | C2H4g02198 | CX4g035338 | LOC_Os04g38770 | Os04g0461300 | - | Detail |
| C1H4g16630 | 4:20,087,292-20,103,395 | - | C2H4g30121 | - | - | - | - | Detail |
| C1H4g09833 | 4:20,107,659-20,108,803 | - | C2H4g15152 | CX4g032154 | - | Os04g0461600 | - | Detail |
| C1H4g11139 | 4:20,114,503-20,117,717 | - | C2H4g04073 | CX4g033096 | LOC_Os04g38810 | Os04g0461800 | - | Detail |
| C1H4g20046 | 4:20,119,778-20,126,787 | - | C2H4g14143 | CX4g035671 | LOC_Os04g38850 | Os04g0462300 | - | Detail |
| C1H4g28167 | 4:20,124,184-20,124,561 | + | C2H4g25655 | CX4g034495 | LOC_Os04g38840 | Os04g0462200 | - | Detail |
| C1H4g07343 | 4:20,127,971-20,130,002 | - | C2H4g21045 | CX4g031760 | LOC_Os04g38860 | Os04g0462400 | OsLHT4 | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g005047 | 1:2,072,547-2,072,876 | - | C1H1g12945 | C2H1g20272 | LOC_Os01g06520 | Os01g0149700 | KINt1 | Detail |
| CX1g003624 | 1:2,078,822-2,079,019 | - | - | C2H1g14098 | - | - | - | Detail |
| CX1g000648 | 1:2,082,745-2,084,171 | - | - | - | - | - | - | Detail |
| CX1g003888 | 1:2,106,381-2,106,950 | + | C1H1g29078 | C2H1g24298 | LOC_Os01g05250 | Os01g0146200 | - | Detail |
| CX1g000323 | 1:2,166,179-2,170,094 | + | C1H1g18605 | C2H1g08018 | LOC_Os01g05420 | Os01g0147200 | - | Detail |
| CX1g005533 | 1:2,171,659-2,172,408 | - | - | - | - | Os01g0147250 | - | Detail |
| CX1g001325 | 1:2,171,941-2,174,602 | + | C1H1g08705 | C2H1g25573 | LOC_Os01g05430 | Os01g0147300 | - | Detail |
| CX1g006491 | 1:2,180,893-2,181,051 | + | - | - | - | - | - | Detail |
| CX1g003030 | 1:2,191,343-2,194,905 | - | C1H1g11928 | C2H1g25353 | LOC_Os01g05470 | Os01g0147700 | - | Detail |
| CX1g005120 | 1:2,202,349-2,205,877 | - | C1H1g17304 | C2H1g29480 | LOC_Os01g05480 | Os01g0147800 | - | Detail |
| CX1g006525 | 1:2,207,260-2,210,546 | - | C1H1g08404 | C2H1g30066 | LOC_Os01g05490 | Os01g0147900 | OsTPI1, OsTPI1.1 | Detail |
| CX1g001423 | 1:2,216,430-2,228,307 | + | C1H1g03903 | C2H1g25150 | LOC_Os01g05500 | Os01g0148000 | - | Detail |
| CX1g005368 | 1:2,238,442-2,242,036 | - | - | C2H1g10498 | LOC_Os01g05620 | Os01g0149500 | PIT, Pit, Pit(K59), Pit(Npb), Pi-t, PitNpb, PitK59 | Detail |
| CX1g005739 | 1:2,243,300-2,243,761 | + | C1H1g09766 | C2H1g18971 | LOC_Os01g05630 | Os01g0149600 | H2B | Detail |
| CX1g006643 | 1:2,245,123-2,248,470 | - | C1H1g01144 | C2H1g06791 | LOC_Os01g05640 | Os01g0149700 | KINt1 | Detail |
| CX1g006502 | 1:2,256,318-2,260,166 | - | C1H1g17924 | C2H1g25044 | LOC_Os01g05660 | Os01g0149900 | - | Detail |
| CX1g002286 | 1:2,265,565-2,268,998 | - | C1H1g30008 | C2H1g00511 | LOC_Os01g05670 | Os01g0150000 | - | Detail |
| CX1g004862 | 1:2,269,565-2,270,509 | - | - | - | - | - | - | Detail |
| CX1g000079 | 1:2,271,984-2,274,513 | + | C1H1g15806 | C2H1g17834 | LOC_Os01g05680 | Os01g0150100 | OsPGGT I-β | Detail |
| CX1g000733 | 1:2,305,907-2,307,621 | + | - | C2H1g16876 | LOC_Os01g05790 | Os01g0151100 | - | Detail |