| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H3g11162 | 3:28,942,521-28,952,434 | - | C2H3g22149 | CX3g031238 | LOC_Os03g53880 | Os03g0749800 | - | Detail |
| C1H3g23610 | 3:28,952,669-28,954,097 | + | C2H3g15338 | CX3g030383 | LOC_Os03g53890 | Os03g0749900 | - | Detail |
| C1H3g03771 | 3:28,954,733-28,955,042 | - | C2H3g01456 | CX3g029891 | LOC_Os03g53900 | Os03g0305400 | OsUSP3 | Detail |
| C1H3g04362 | 3:28,955,086-28,955,559 | - | C2H3g01456 | CX3g029891 | LOC_Os03g53900 | Os03g0750000 | - | Detail |
| C1H3g05432 | 3:28,956,506-28,959,788 | - | C2H3g29736 | - | LOC_Os03g53910 | Os03g0750100 | - | Detail |
| C1H3g04679 | 3:28,967,017-28,975,335 | + | C2H3g18037 | CX3g029217 | LOC_Os03g53920 | Os03g0750300 | - | Detail |
| C1H3g27629 | 3:28,981,332-28,983,833 | - | C2H3g28860 | CX3g026013 | LOC_Os03g53950 | Os03g0750700 | - | Detail |
| C1H3g16169 | 3:28,988,871-28,994,656 | - | C2H3g13208 | CX3g028825 | LOC_Os03g53960 | Os03g0750800 | - | Detail |
| C1H3g17674 | 3:28,995,345-28,997,798 | - | C2H3g05622 | CX3g025807 | LOC_Os03g53970 | Os03g0750900 | - | Detail |
| C1H3g30640 | 3:29,000,380-29,001,178 | + | C2H3g27227 | CX3g029898 | LOC_Os03g53980 | Os03g0751000 | - | Detail |
| C1H3g24232 | 3:29,002,393-29,003,257 | - | C2H3g03528 | CX3g026633 | LOC_Os03g54910 | Os03g0221500 | - | Detail |
| C1H3g23380 | 3:29,005,065-29,009,686 | + | C2H3g12979 | CX3g029143 | LOC_Os03g53990 | Os03g0751050 | - | Detail |
| C1H3g12600 | 3:29,010,681-29,014,454 | - | C2H3g03358 | CX3g026203 | LOC_Os03g54000 | Os03g0751100 | - | Detail |
| C1H3g23388 | 3:29,021,406-29,026,794 | + | C2H3g04810 | CX3g028609 | LOC_Os03g54040 | Os03g0751400 | - | Detail |
| C1H3g07489 | 3:29,032,194-29,033,905 | + | C2H3g04305 | CX3g027092 | LOC_Os03g54050 | Os03g0751600 | - | Detail |
| C1H3g19762 | 3:29,042,680-29,048,070 | + | C2H3g09716 | CX3g030127 | LOC_Os03g54084 | Os03g0752100 | PHYC | Detail |
| C1H3g25474 | 3:29,048,583-29,052,457 | + | C2H3g05209 | CX3g031059 | LOC_Os03g54091 | Os03g0752200 | OsSPO11-1, OsTOP6A1 | Detail |
| C1H3g21048 | 3:29,053,913-29,054,721 | - | C2H3g18265 | CX3g026511 | LOC_Os03g54100 | Os03g0752300 | TPKA, TPKa, OsTPKa | Detail |
| C1H3g03067 | 3:29,062,539-29,063,964 | + | C2H3g06363 | CX3g025106 | LOC_Os03g54130 | Os03g0752500 | - | Detail |
| C1H3g23694 | 3:29,065,391-29,069,538 | + | C2H3g21077 | CX3g030009 | LOC_Os03g54150 | Os03g0752700 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g005047 | 1:2,072,547-2,072,876 | - | C1H1g12945 | C2H1g20272 | LOC_Os01g06520 | Os01g0149700 | KINt1 | Detail |
| CX1g003624 | 1:2,078,822-2,079,019 | - | - | C2H1g14098 | - | - | - | Detail |
| CX1g000648 | 1:2,082,745-2,084,171 | - | - | - | - | - | - | Detail |
| CX1g003888 | 1:2,106,381-2,106,950 | + | C1H1g29078 | C2H1g24298 | LOC_Os01g05250 | Os01g0146200 | - | Detail |
| CX1g000323 | 1:2,166,179-2,170,094 | + | C1H1g18605 | C2H1g08018 | LOC_Os01g05420 | Os01g0147200 | - | Detail |
| CX1g005533 | 1:2,171,659-2,172,408 | - | - | - | - | Os01g0147250 | - | Detail |
| CX1g001325 | 1:2,171,941-2,174,602 | + | C1H1g08705 | C2H1g25573 | LOC_Os01g05430 | Os01g0147300 | - | Detail |
| CX1g006491 | 1:2,180,893-2,181,051 | + | - | - | - | - | - | Detail |
| CX1g003030 | 1:2,191,343-2,194,905 | - | C1H1g11928 | C2H1g25353 | LOC_Os01g05470 | Os01g0147700 | - | Detail |
| CX1g005120 | 1:2,202,349-2,205,877 | - | C1H1g17304 | C2H1g29480 | LOC_Os01g05480 | Os01g0147800 | - | Detail |
| CX1g006525 | 1:2,207,260-2,210,546 | - | C1H1g08404 | C2H1g30066 | LOC_Os01g05490 | Os01g0147900 | OsTPI1, OsTPI1.1 | Detail |
| CX1g001423 | 1:2,216,430-2,228,307 | + | C1H1g03903 | C2H1g25150 | LOC_Os01g05500 | Os01g0148000 | - | Detail |
| CX1g005368 | 1:2,238,442-2,242,036 | - | - | C2H1g10498 | LOC_Os01g05620 | Os01g0149500 | PIT, Pit, Pit(K59), Pit(Npb), Pi-t, PitNpb, PitK59 | Detail |
| CX1g005739 | 1:2,243,300-2,243,761 | + | C1H1g09766 | C2H1g18971 | LOC_Os01g05630 | Os01g0149600 | H2B | Detail |
| CX1g006643 | 1:2,245,123-2,248,470 | - | C1H1g01144 | C2H1g06791 | LOC_Os01g05640 | Os01g0149700 | KINt1 | Detail |
| CX1g006502 | 1:2,256,318-2,260,166 | - | C1H1g17924 | C2H1g25044 | LOC_Os01g05660 | Os01g0149900 | - | Detail |
| CX1g002286 | 1:2,265,565-2,268,998 | - | C1H1g30008 | C2H1g00511 | LOC_Os01g05670 | Os01g0150000 | - | Detail |
| CX1g004862 | 1:2,269,565-2,270,509 | - | - | - | - | - | - | Detail |
| CX1g000079 | 1:2,271,984-2,274,513 | + | C1H1g15806 | C2H1g17834 | LOC_Os01g05680 | Os01g0150100 | OsPGGT I-β | Detail |
| CX1g000733 | 1:2,305,907-2,307,621 | + | - | C2H1g16876 | LOC_Os01g05790 | Os01g0151100 | - | Detail |