| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H3g15946 | 3:23,583,390-23,583,979 | - | C2H4g20465 | CX3g030879 | - | - | - | Detail |
| C1H3g02767 | 3:23,610,056-23,614,292 | + | C2H3g11048 | CX3g027204 | LOC_Os03g44420 | Os03g0646100 | - | Detail |
| C1H3g15306 | 3:23,617,270-23,620,653 | + | C2H3g09160 | CX3g030130 | LOC_Os03g44440 | Os03g0646300 | OsCNGC4 | Detail |
| C1H3g01932 | 3:23,622,459-23,623,244 | - | C2H3g09347 | CX3g029288 | LOC_Os03g44450 | Os03g0646400 | - | Detail |
| C1H3g04677 | 3:23,627,570-23,636,068 | + | C2H3g17378 | CX3g025480 | LOC_Os03g44484 | Os03g0646800 | - | Detail |
| C1H3g15319 | 3:23,636,428-23,645,365 | - | C2H3g09600 | CX3g030610 | LOC_Os03g44500 | Os03g0646900 | OsPPKL1, GL3.1 | Detail |
| C1H3g31672 | 3:23,657,526-23,660,925 | - | C2H3g20933 | CX3g028021 | LOC_Os03g44530 | Os03g0647500 | - | Detail |
| C1H3g00783 | 3:23,663,885-23,669,173 | - | C2H3g08581 | CX3g025465 | LOC_Os03g44540 | Os03g0647600 | OsNF-YA3, HAP2H | Detail |
| C1H3g28506 | 3:23,684,930-23,688,636 | - | C2H3g28034 | CX3g026616 | LOC_Os03g44560 | Os03g0647800 | - | Detail |
| C1H3g04139 | 3:23,703,224-23,709,578 | - | C2H3g20748 | CX3g026899 | LOC_Os03g44610 | Os03g0648300 | - | Detail |
| C1H3g01950 | 3:23,714,271-23,718,047 | + | C2H3g20479 | CX3g030255 | LOC_Os03g44620 | Os03g0648400 | - | Detail |
| C1H3g13484 | 3:23,718,235-23,718,780 | - | C2H3g07590 | CX3g030166 | LOC_Os03g44630 | Os03g0648500 | - | Detail |
| C1H3g12327 | 3:23,741,182-23,744,838 | + | C2H3g02590 | CX3g030053 | LOC_Os03g44660 | Os03g0648900 | - | Detail |
| C1H3g07360 | 3:23,746,379-23,749,824 | - | C2H3g08448 | CX3g030188 | LOC_Os03g44670 | Os03g0649000 | - | Detail |
| C1H3g11970 | 3:23,770,748-23,771,623 | + | C2H3g18182 | CX3g028790 | - | - | - | Detail |
| C1H3g00053 | 3:23,796,202-23,806,042 | + | C2H3g11794 | CX3g029987 | LOC_Os03g44710 | Os03g0650000 | - | Detail |
| C1H3g08255 | 3:23,853,350-23,859,840 | + | C2H3g05995 | CX3g025417 | LOC_Os03g44760 | Os03g0650400 | OsAM1 | Detail |
| C1H3g04288 | 3:23,865,917-23,869,003 | + | C2H3g04123 | CX3g029305 | LOC_Os03g44780 | Os03g0650700 | - | Detail |
| C1H3g26002 | 3:23,876,596-23,879,817 | + | C2H3g25934 | CX3g030102 | LOC_Os03g44800 | Os03g0650800 | - | Detail |
| C1H3g15894 | 3:23,880,948-23,883,516 | - | C2H3g09215 | CX3g025882 | LOC_Os03g44810 | Os03g0650900 | OsNLA2 | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g005047 | 1:2,072,547-2,072,876 | - | C1H1g12945 | C2H1g20272 | LOC_Os01g06520 | Os01g0149700 | KINt1 | Detail |
| CX1g003624 | 1:2,078,822-2,079,019 | - | - | C2H1g14098 | - | - | - | Detail |
| CX1g000648 | 1:2,082,745-2,084,171 | - | - | - | - | - | - | Detail |
| CX1g003888 | 1:2,106,381-2,106,950 | + | C1H1g29078 | C2H1g24298 | LOC_Os01g05250 | Os01g0146200 | - | Detail |
| CX1g000323 | 1:2,166,179-2,170,094 | + | C1H1g18605 | C2H1g08018 | LOC_Os01g05420 | Os01g0147200 | - | Detail |
| CX1g005533 | 1:2,171,659-2,172,408 | - | - | - | - | Os01g0147250 | - | Detail |
| CX1g001325 | 1:2,171,941-2,174,602 | + | C1H1g08705 | C2H1g25573 | LOC_Os01g05430 | Os01g0147300 | - | Detail |
| CX1g006491 | 1:2,180,893-2,181,051 | + | - | - | - | - | - | Detail |
| CX1g003030 | 1:2,191,343-2,194,905 | - | C1H1g11928 | C2H1g25353 | LOC_Os01g05470 | Os01g0147700 | - | Detail |
| CX1g005120 | 1:2,202,349-2,205,877 | - | C1H1g17304 | C2H1g29480 | LOC_Os01g05480 | Os01g0147800 | - | Detail |
| CX1g006525 | 1:2,207,260-2,210,546 | - | C1H1g08404 | C2H1g30066 | LOC_Os01g05490 | Os01g0147900 | OsTPI1, OsTPI1.1 | Detail |
| CX1g001423 | 1:2,216,430-2,228,307 | + | C1H1g03903 | C2H1g25150 | LOC_Os01g05500 | Os01g0148000 | - | Detail |
| CX1g005368 | 1:2,238,442-2,242,036 | - | - | C2H1g10498 | LOC_Os01g05620 | Os01g0149500 | PIT, Pit, Pit(K59), Pit(Npb), Pi-t, PitNpb, PitK59 | Detail |
| CX1g005739 | 1:2,243,300-2,243,761 | + | C1H1g09766 | C2H1g18971 | LOC_Os01g05630 | Os01g0149600 | H2B | Detail |
| CX1g006643 | 1:2,245,123-2,248,470 | - | C1H1g01144 | C2H1g06791 | LOC_Os01g05640 | Os01g0149700 | KINt1 | Detail |
| CX1g006502 | 1:2,256,318-2,260,166 | - | C1H1g17924 | C2H1g25044 | LOC_Os01g05660 | Os01g0149900 | - | Detail |
| CX1g002286 | 1:2,265,565-2,268,998 | - | C1H1g30008 | C2H1g00511 | LOC_Os01g05670 | Os01g0150000 | - | Detail |
| CX1g004862 | 1:2,269,565-2,270,509 | - | - | - | - | - | - | Detail |
| CX1g000079 | 1:2,271,984-2,274,513 | + | C1H1g15806 | C2H1g17834 | LOC_Os01g05680 | Os01g0150100 | OsPGGT I-β | Detail |
| CX1g000733 | 1:2,305,907-2,307,621 | + | - | C2H1g16876 | LOC_Os01g05790 | Os01g0151100 | - | Detail |