| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H1g05447 | 1:3,897,349-3,900,750 | + | C2H1g11034 | CX1g004726 | LOC_Os01g08850 | Os01g0184000 | - | Detail |
| C1H1g08258 | 1:3,903,267-3,907,393 | - | C2H1g25930 | CX1g006276 | LOC_Os01g08930 | Os01g0184500 | - | Detail |
| C1H1g29228 | 1:3,913,630-3,914,392 | + | C2H1g18729 | CX1g005580 | LOC_Os01g08950 | Os01g0715800 | - | Detail |
| C1H1g07230 | 1:3,914,526-3,917,510 | - | C2H1g08065 | CX1g001833 | LOC_Os01g08960 | Os01g0184800 | - | Detail |
| C1H1g00754 | 1:3,917,719-3,924,507 | + | C2H1g16483 | CX1g001927 | LOC_Os01g08970 | Os01g0184900 | - | Detail |
| C1H1g18602 | 1:3,925,864-3,929,743 | + | C2H1g08712 | CX1g006005 | LOC_Os01g08990 | Os01g0185100 | - | Detail |
| C1H1g09937 | 1:3,931,008-3,937,066 | - | C2H1g10102 | CX1g000003 | LOC_Os01g09000 | Os01g0185200 | - | Detail |
| C1H1g12656 | 1:3,944,739-3,949,168 | + | C2H1g17955 | CX1g005455 | LOC_Os01g09010 | Os01g0185300 | - | Detail |
| C1H1g03940 | 1:3,950,356-3,956,527 | + | C2H1g17802 | CX1g004120 | LOC_Os01g09020 | Os01g0185400 | OsCBE1 | Detail |
| C1H1g23338 | 1:3,959,401-3,962,917 | + | C2H1g12463 | CX1g004591 | LOC_Os01g09030 | Os01g0185500 | - | Detail |
| C1H1g06268 | 1:3,972,573-3,974,529 | + | C2H1g25484 | CX1g000928 | LOC_Os01g09080 | Os01g0185900 | - | Detail |
| C1H1g00047 | 1:3,988,556-3,991,526 | - | C2H1g05521 | CX1g004425 | LOC_Os01g09120 | Os01g0186200 | - | Detail |
| C1H1g06584 | 1:4,001,275-4,002,665 | - | C2H1g14524 | - | - | - | - | Detail |
| C1H1g20061 | 1:4,004,571-4,011,310 | - | - | - | - | - | - | Detail |
| C1H1g09605 | 1:4,035,938-4,045,487 | - | C2H1g24918 | CX1g001893 | LOC_Os01g09200 | Os01g0186700 | OsSTK38, TINY1 | Detail |
| C1H1g07377 | 1:4,060,793-4,062,834 | + | C2H1g05283 | CX1g002460 | LOC_Os01g09230 | Os01g0187000 | - | Detail |
| C1H1g28342 | 1:4,080,979-4,092,678 | + | C2H1g23178 | CX1g002282 | LOC_Os01g09246 | Os01g0187400 | - | Detail |
| C1H1g13448 | 1:4,094,957-4,098,718 | + | C2H1g13013 | CX1g002953 | LOC_Os01g09252 | Os01g0187500 | - | Detail |
| C1H1g18332 | 1:4,102,891-4,103,172 | - | C2H1g05231 | CX1g004008 | LOC_Os01g09260 | Os01g0197700 | Gn1a, OsCKX2 | Detail |
| C1H1g10697 | 1:4,103,286-4,105,381 | - | C2H1g05231 | CX1g004008 | LOC_Os01g09260 | Os01g0187600 | OsCKX1 | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g005047 | 1:2,072,547-2,072,876 | - | C1H1g12945 | C2H1g20272 | LOC_Os01g06520 | Os01g0149700 | KINt1 | Detail |
| CX1g003624 | 1:2,078,822-2,079,019 | - | - | C2H1g14098 | - | - | - | Detail |
| CX1g000648 | 1:2,082,745-2,084,171 | - | - | - | - | - | - | Detail |
| CX1g003888 | 1:2,106,381-2,106,950 | + | C1H1g29078 | C2H1g24298 | LOC_Os01g05250 | Os01g0146200 | - | Detail |
| CX1g000323 | 1:2,166,179-2,170,094 | + | C1H1g18605 | C2H1g08018 | LOC_Os01g05420 | Os01g0147200 | - | Detail |
| CX1g005533 | 1:2,171,659-2,172,408 | - | - | - | - | Os01g0147250 | - | Detail |
| CX1g001325 | 1:2,171,941-2,174,602 | + | C1H1g08705 | C2H1g25573 | LOC_Os01g05430 | Os01g0147300 | - | Detail |
| CX1g006491 | 1:2,180,893-2,181,051 | + | - | - | - | - | - | Detail |
| CX1g003030 | 1:2,191,343-2,194,905 | - | C1H1g11928 | C2H1g25353 | LOC_Os01g05470 | Os01g0147700 | - | Detail |
| CX1g005120 | 1:2,202,349-2,205,877 | - | C1H1g17304 | C2H1g29480 | LOC_Os01g05480 | Os01g0147800 | - | Detail |
| CX1g006525 | 1:2,207,260-2,210,546 | - | C1H1g08404 | C2H1g30066 | LOC_Os01g05490 | Os01g0147900 | OsTPI1, OsTPI1.1 | Detail |
| CX1g001423 | 1:2,216,430-2,228,307 | + | C1H1g03903 | C2H1g25150 | LOC_Os01g05500 | Os01g0148000 | - | Detail |
| CX1g005368 | 1:2,238,442-2,242,036 | - | - | C2H1g10498 | LOC_Os01g05620 | Os01g0149500 | PIT, Pit, Pit(K59), Pit(Npb), Pi-t, PitNpb, PitK59 | Detail |
| CX1g005739 | 1:2,243,300-2,243,761 | + | C1H1g09766 | C2H1g18971 | LOC_Os01g05630 | Os01g0149600 | H2B | Detail |
| CX1g006643 | 1:2,245,123-2,248,470 | - | C1H1g01144 | C2H1g06791 | LOC_Os01g05640 | Os01g0149700 | KINt1 | Detail |
| CX1g006502 | 1:2,256,318-2,260,166 | - | C1H1g17924 | C2H1g25044 | LOC_Os01g05660 | Os01g0149900 | - | Detail |
| CX1g002286 | 1:2,265,565-2,268,998 | - | C1H1g30008 | C2H1g00511 | LOC_Os01g05670 | Os01g0150000 | - | Detail |
| CX1g004862 | 1:2,269,565-2,270,509 | - | - | - | - | - | - | Detail |
| CX1g000079 | 1:2,271,984-2,274,513 | + | C1H1g15806 | C2H1g17834 | LOC_Os01g05680 | Os01g0150100 | OsPGGT I-β | Detail |
| CX1g000733 | 1:2,305,907-2,307,621 | + | - | C2H1g16876 | LOC_Os01g05790 | Os01g0151100 | - | Detail |