| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H1g02341 | 1:19,552-27,397 | + | C2H1g13015 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C1H1g23301 | 1:34,909-38,077 | + | C2H1g25732 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C1H1g05541 | 1:38,658-42,693 | + | C2H1g24136 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C1H1g18141 | 1:45,137-49,100 | + | C2H1g01770 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C1H1g06702 | 1:49,316-50,669 | + | C2H1g21686 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C1H1g15122 | 1:53,886-58,091 | + | C2H1g03140 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C1H1g26676 | 1:58,983-64,706 | + | C2H1g12741 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C1H1g29605 | 1:68,013-72,703 | + | C2H1g30020 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C1H1g15874 | 1:72,685-75,717 | - | C2H1g01369 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C1H1g31238 | 1:79,440-86,394 | + | C2H1g16597 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C1H1g30351 | 1:88,972-90,382 | + | C2H1g26722 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C1H1g07147 | 1:93,453-96,885 | + | C2H1g16862 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C1H1g23624 | 1:103,904-104,966 | + | C2H1g21224 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C1H1g19237 | 1:106,332-109,626 | + | C2H1g12981 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C1H1g02228 | 1:110,056-112,714 | + | C2H1g13148 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C1H1g19000 | 1:113,782-115,921 | + | C2H1g25133 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| C1H1g20467 | 1:116,248-118,728 | + | C2H1g01047 | CX1g001371 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| C1H1g21121 | 1:119,474-124,658 | + | C2H1g05282 | CX1g006904 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| C1H1g31375 | 1:129,470-130,340 | - | C2H1g27348 | CX1g001497 | LOC_Os01g01340 | Os01g0102900 | LIR1, Lir1 | Detail |
| C1H1g31418 | 1:131,158-133,161 | - | C2H1g25360 | CX1g000859 | LOC_Os01g01350 | Os01g0103000 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H4g28226 | 4:25,141,928-25,144,517 | - | C1H4g09996 | - | LOC_Os04g49130 | Os04g0580400 | OsSCE3 | Detail |
| C2H4g09701 | 4:25,148,467-25,149,423 | - | - | CX4g035401 | LOC_Os04g49140 | Os04g0580500 | - | Detail |
| C2H4g28180 | 4:25,157,517-25,163,020 | + | C1H4g28417 | CX4g036099 | LOC_Os04g49150 | Os04g0580700 | MADS17, OsMADS17, NMADS3, RMADS213, nmads3 | Detail |
| C2H4g29841 | 4:25,165,360-25,165,848 | - | C1H4g23703 | CX4g031640 | LOC_Os04g49160 | Os04g0580800 | OsRFPH2-6 | Detail |
| C2H4g24583 | 4:25,170,519-25,171,040 | - | - | CX4g034669 | LOC_Os04g49170 | Os04g0580866 | - | Detail |
| C2H4g04279 | 4:25,172,890-25,175,528 | - | C1H8g13175 | CX4g033382 | LOC_Os06g36530 | - | - | Detail |
| C2H4g16797 | 4:25,186,392-25,187,121 | + | C1H4g30271 | CX4g035989 | LOC_Os04g49194 | Os04g0581000 | OsSAH2 | Detail |
| C2H4g02021 | 4:25,191,095-25,192,198 | + | C1H4g21644 | CX4g035989 | LOC_Os04g49194 | Os04g0581000 | OsSAH2 | Detail |
| C2H4g17595 | 4:25,193,950-25,195,360 | - | C1H4g27247 | CX4g034941 | LOC_Os04g49210 | Os04g0581100 | OsSAH3 | Detail |
| C2H4g22618 | 4:25,205,221-25,207,845 | - | C1H4g19809 | CX4g034701 | LOC_Os04g49220 | Os04g0581300 | - | Detail |
| C2H4g25213 | 4:25,221,044-25,222,318 | - | C1H4g15146 | CX4g035204 | LOC_Os04g49230 | Os04g0581400 | RAVL1 | Detail |
| C2H4g07246 | 4:25,264,468-25,264,665 | + | - | CX4g034172 | - | Os04g0581700 | - | Detail |
| C2H4g27357 | 4:25,266,514-25,267,024 | - | C1H4g26375 | CX4g036477 | LOC_Os04g49260 | Os04g0581800 | - | Detail |
| C2H4g21103 | 4:25,268,952-25,273,054 | - | C1H4g04071 | CX4g033493 | LOC_Os04g49270 | Os04g0582000 | OsDNA2_12 | Detail |
| C2H4g08363 | 4:25,274,439-25,278,081 | - | C1H4g14184 | CX4g033493 | LOC_Os04g49310 | Os04g0582600 | OsDNA2_13 | Detail |
| C2H4g08829 | 4:25,279,421-25,279,981 | - | C1H4g14184 | CX4g033493 | - | - | - | Detail |
| C2H4g18439 | 4:25,281,550-25,287,064 | - | C1H4g22667 | CX4g036138 | LOC_Os04g49320 | Os04g0582700 | OsDNA2_10 | Detail |
| C2H4g11122 | 4:25,288,555-25,288,861 | - | C1H4g13543 | CX4g033723 | LOC_Os04g49340 | Os04g0582900 | OsDNA2_11 | Detail |
| C2H4g27939 | 4:25,288,930-25,290,634 | - | C1H4g13543 | CX4g036138 | LOC_Os04g49340 | Os04g0582900 | OsDNA2_11 | Detail |
| C2H4g27086 | 4:25,293,122-25,293,784 | - | C1H4g24238 | - | - | - | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002944 | 1:25,444,405-25,446,856 | + | C1H1g27228 | C2H1g18077 | LOC_Os01g49320 | Os01g0691050 | - | Detail |
| CX1g001683 | 1:25,447,512-25,448,648 | - | C1H1g29046 | C2H1g22688 | LOC_Os01g49640 | Os01g0691300 | - | Detail |
| CX1g006685 | 1:25,449,250-25,450,596 | + | C1H1g12678 | C2H1g26124 | LOC_Os01g49660 | Os01g0691400 | - | Detail |
| CX1g003503 | 1:25,451,355-25,454,745 | - | C1H1g11648 | C2H1g16571 | LOC_Os01g49670 | Os01g0691500 | - | Detail |
| CX1g003138 | 1:25,454,891-25,462,340 | + | C1H1g24416 | C2H1g18353 | LOC_Os01g49680 | Os01g0691600 | - | Detail |
| CX1g001134 | 1:25,464,773-25,468,766 | + | C1H1g26359 | C2H1g17191 | LOC_Os01g49690 | Os01g0691700 | - | Detail |
| CX1g003734 | 1:25,472,403-25,472,894 | - | - | - | - | - | - | Detail |
| CX1g001038 | 1:25,476,417-25,480,854 | - | C1H1g16215 | C2H1g11955 | LOC_Os01g49720 | Os01g0692000 | - | Detail |
| CX1g002278 | 1:25,483,521-25,485,766 | + | C1H1g08026 | C2H1g16812 | LOC_Os01g49740 | Os01g0692300 | - | Detail |
| CX1g004143 | 1:25,492,714-25,496,982 | + | C1H1g09942 | C2H1g01533 | LOC_Os01g49760 | Os01g0692600 | - | Detail |
| CX1g006365 | 1:25,498,061-25,501,573 | - | C1H1g28839 | C2H1g21603 | LOC_Os01g49770 | Os01g0692700 | OsSIRH2-23, OsRFPH2-23 | Detail |
| CX1g003738 | 1:25,512,163-25,513,122 | + | C1H1g28446 | C2H1g03137 | LOC_Os01g49810 | Os01g0693100 | - | Detail |
| CX1g001085 | 1:25,518,791-25,520,638 | + | C1H1g29386 | C2H1g09620 | LOC_Os01g49820 | Os01g0693300 | - | Detail |
| CX1g003260 | 1:25,531,981-25,533,168 | - | C1H1g22206 | C2H1g04896 | LOC_Os01g49830 | Os01g0693400 | OsRAV11 | Detail |
| CX1g002454 | 1:25,536,309-25,536,698 | + | - | - | - | Os01g0693466 | - | Detail |
| CX1g004016 | 1:25,555,625-25,555,774 | - | - | - | - | - | - | Detail |
| CX1g004359 | 1:25,561,492-25,561,674 | + | - | - | LOC_Os01g49630 | Os01g0728000 | - | Detail |
| CX1g001144 | 1:25,573,165-25,574,757 | - | C1H5g02487 | C2H5g22501 | LOC_Os01g49890 | Os01g0693800 | - | Detail |
| CX1g006741 | 1:25,577,232-25,579,455 | - | C1H1g28615 | C2H1g14365 | LOC_Os01g49900 | Os01g0693900 | - | Detail |
| CX1g002422 | 1:25,584,759-25,588,055 | + | C1H1g20356 | C2H1g09264 | LOC_Os01g49910 | Os01g0694000 | - | Detail |