| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H1g02341 | 1:19,552-27,397 | + | C2H1g13015 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C1H1g23301 | 1:34,909-38,077 | + | C2H1g25732 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C1H1g05541 | 1:38,658-42,693 | + | C2H1g24136 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C1H1g18141 | 1:45,137-49,100 | + | C2H1g01770 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C1H1g06702 | 1:49,316-50,669 | + | C2H1g21686 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C1H1g15122 | 1:53,886-58,091 | + | C2H1g03140 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C1H1g26676 | 1:58,983-64,706 | + | C2H1g12741 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C1H1g29605 | 1:68,013-72,703 | + | C2H1g30020 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C1H1g15874 | 1:72,685-75,717 | - | C2H1g01369 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C1H1g31238 | 1:79,440-86,394 | + | C2H1g16597 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C1H1g30351 | 1:88,972-90,382 | + | C2H1g26722 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C1H1g07147 | 1:93,453-96,885 | + | C2H1g16862 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C1H1g23624 | 1:103,904-104,966 | + | C2H1g21224 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C1H1g19237 | 1:106,332-109,626 | + | C2H1g12981 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C1H1g02228 | 1:110,056-112,714 | + | C2H1g13148 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C1H1g19000 | 1:113,782-115,921 | + | C2H1g25133 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| C1H1g20467 | 1:116,248-118,728 | + | C2H1g01047 | CX1g001371 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| C1H1g21121 | 1:119,474-124,658 | + | C2H1g05282 | CX1g006904 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| C1H1g31375 | 1:129,470-130,340 | - | C2H1g27348 | CX1g001497 | LOC_Os01g01340 | Os01g0102900 | LIR1, Lir1 | Detail |
| C1H1g31418 | 1:131,158-133,161 | - | C2H1g25360 | CX1g000859 | LOC_Os01g01350 | Os01g0103000 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H3g01980 | 3:28,769,869-28,772,490 | - | C1H3g09903 | CX3g026536 | LOC_Os03g55320 | Os03g0761100 | - | Detail |
| C2H3g06672 | 3:28,774,318-28,777,794 | - | C1H3g13690 | CX3g026537 | LOC_Os03g55330 | Os03g0761200 | - | Detail |
| C2H3g12099 | 3:28,793,894-28,798,830 | + | C1H3g30024 | CX3g028991 | LOC_Os03g55360 | Os03g0761700 | - | Detail |
| C2H3g13639 | 3:28,801,419-28,805,273 | + | C1H3g06743 | CX3g030441 | LOC_Os03g55380 | Os03g0761900 | - | Detail |
| C2H3g22708 | 3:28,807,938-28,813,613 | - | C1H3g04781 | CX3g027555 | LOC_Os03g55389 | Os03g0762000 | HD6, Hd6, Hd6(t)*, OsCKA2, OSCKA2 | Detail |
| C2H3g06124 | 3:28,815,348-28,816,132 | - | C1H3g13239 | CX3g029923 | LOC_Os03g55400 | Os03g0762100 | - | Detail |
| C2H3g03334 | 3:28,824,236-28,825,529 | + | C1H3g15054 | CX3g027273 | LOC_Os03g55410 | Os03g0762300 | - | Detail |
| C2H3g28441 | 3:28,829,093-28,831,783 | + | C1H3g30848 | CX3g028085 | LOC_Os03g55420 | Os03g0762400 | - | Detail |
| C2H3g23566 | 3:28,836,777-28,837,357 | + | C1H3g21651 | CX3g025152 | LOC_Os07g02460 | Os03g0206400 | - | Detail |
| C2H3g15621 | 3:28,837,367-28,837,765 | + | - | - | LOC_Os03g55430 | Os03g0762500 | - | Detail |
| C2H3g21236 | 3:28,841,343-28,843,221 | - | C1H3g30412 | CX3g028267 | LOC_Os03g55450 | Os03g0762700 | - | Detail |
| C2H3g28904 | 3:28,851,569-28,855,786 | + | C1H3g31602 | CX3g027974 | LOC_Os03g55470 | Os03g0762900 | - | Detail |
| C2H3g20218 | 3:28,861,702-28,866,046 | + | C1H3g12054 | CX3g028419 | LOC_Os03g55490 | Os03g0763000 | - | Detail |
| C2H3g15832 | 3:28,890,305-28,892,884 | + | C1H3g10528 | CX3g027285 | LOC_Os03g55530 | Os03g0764000 | GSE3 | Detail |
| C2H3g26472 | 3:28,905,764-28,912,939 | - | C1H3g07992 | CX3g027062 | LOC_Os03g55560 | Os03g0764300 | OstMAPKKK5 | Detail |
| C2H3g25717 | 3:28,919,148-28,926,059 | + | C1H3g08783 | CX3g027539 | LOC_Os03g55570 | Os03g0764550 | - | Detail |
| C2H3g13812 | 3:28,935,297-28,937,445 | + | C1H3g17565 | CX3g029766 | LOC_Os03g55590 | Os03g0764600 | OsHHO3 | Detail |
| C2H3g16680 | 3:28,942,582-28,947,621 | + | C1H3g10682 | CX3g030582 | LOC_Os03g55600 | Os03g0764800 | SAPK8, OsSAPK8 | Detail |
| C2H3g01981 | 3:28,965,418-28,968,051 | + | C1H3g29826 | CX3g027424 | LOC_Os03g55620 | Os03g0765000 | - | Detail |
| C2H3g10671 | 3:28,969,609-28,972,477 | + | C1H3g07713 | CX3g029687 | LOC_Os03g55630 | Os03g0765100 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX6g042849 | 6:19,028,671-19,035,805 | - | C1H6g23075 | C2H6g00215 | LOC_Os06g36840 | Os06g0564500 | - | Detail |
| CX6g041590 | 6:19,063,142-19,067,187 | - | C1H6g25657 | C2H6g19648 | LOC_Os06g36890 | Os06g0564800 | - | Detail |
| CX6g042099 | 6:19,072,393-19,074,529 | + | C1H6g19779 | C2H6g11712 | LOC_Os06g36910 | Os06g0565000 | - | Detail |
| CX6g045195 | 6:19,077,655-19,080,610 | - | C1H6g21436 | C2H6g16057 | LOC_Os06g36920 | Os06g0565100 | Os5100, CYP711A6 | Detail |
| CX6g044852 | 6:19,083,401-19,084,422 | + | C1H6g20132 | C2H6g28646 | LOC_Os06g36930 | Os06g0565200 | - | Detail |
| CX6g042845 | 6:19,085,423-19,087,036 | - | C1H6g20943 | C2H6g27698 | LOC_Os06g36940 | Os06g0565300 | - | Detail |
| CX6g045488 | 6:19,108,431-19,114,132 | + | C1H6g07047 | C2H6g14787 | LOC_Os06g36990 | Os06g0565900 | - | Detail |
| CX6g044842 | 6:19,117,619-19,121,023 | + | C1H6g06781 | C2H6g12222 | LOC_Os06g37000 | Os06g0566100 | - | Detail |
| CX6g045261 | 6:19,123,235-19,125,159 | + | C1H6g20512 | C2H6g05740 | LOC_Os06g37010 | Os06g0566300 | - | Detail |
| CX6g044002 | 6:19,138,071-19,138,589 | - | - | - | - | - | - | Detail |
| CX6g045313 | 6:19,146,975-19,147,859 | + | C1H6g09779 | - | LOC_Os06g37020 | Os06g0566500 | - | Detail |
| CX6g041640 | 6:19,160,670-19,160,981 | - | C1H5g30033 | C2H3g30122 | - | Os04g0412350 | - | Detail |
| CX6g045076 | 6:19,163,225-19,165,406 | - | C1H6g02032 | C2H6g25496 | LOC_Os06g37080 | Os06g0567200 | OsAAO1 | Detail |
| CX6g043409 | 6:19,169,205-19,169,444 | - | - | - | - | - | - | Detail |
| CX6g044213 | 6:19,171,663-19,171,890 | - | C1H6g28021 | - | - | Os06g0566850 | - | Detail |
| CX6g041535 | 6:19,173,432-19,173,736 | + | - | - | - | - | - | Detail |
| CX6g041847 | 6:19,178,164-19,180,050 | + | C1H6g17693 | C2H6g11534 | LOC_Os06g37070 | Os06g0567000 | - | Detail |
| CX6g041814 | 6:19,186,945-19,191,438 | + | C1H6g27275 | C2H6g19087 | LOC_Os06g37080 | Os06g0567200 | OsAAO1 | Detail |
| CX6g043698 | 6:19,206,458-19,206,607 | - | - | - | - | - | - | Detail |
| CX6g044886 | 6:19,215,573-19,219,283 | + | C1H6g21542 | C2H6g01618 | LOC_Os06g37150 | Os06g0567900 | AO, OsAAO2 | Detail |