| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H3g00456 | 3:1,967,721-1,971,367 | - | C2H3g01677 | CX3g025825 | LOC_Os03g04620 | Os03g0139500 | - | Detail |
| C1H3g23782 | 3:1,976,614-1,978,122 | + | C2H3g16470 | CX3g025500 | LOC_Os03g04630 | Os03g0139600 | - | Detail |
| C1H3g00353 | 3:2,001,135-2,002,661 | + | C2H3g12777 | CX3g025500 | LOC_Os03g04650 | Os03g0140100 | - | Detail |
| C1H3g25985 | 3:2,007,851-2,009,407 | + | C2H3g27330 | CX3g025500 | LOC_Os03g04660 | Os03g0140200 | CYP96B5, WSL5 | Detail |
| C1H3g15064 | 3:2,018,583-2,020,202 | + | C2H3g29153 | CX3g025500 | LOC_Os03g04680 | Os03g0140400 | SD37, OsCYP96B4, CYP96B4, CYP96B4/SD37, OsDSS1, DSS1 | Detail |
| C1H3g14858 | 3:2,020,878-2,021,432 | - | - | - | - | - | - | Detail |
| C1H3g07260 | 3:2,022,825-2,025,230 | - | C2H3g12329 | CX3g029016 | LOC_Os03g16950 | Os03g0140500 | - | Detail |
| C1H3g31769 | 3:2,031,637-2,032,080 | - | C2H3g13203 | CX3g026380 | - | Os03g0140650 | - | Detail |
| C1H3g10738 | 3:2,034,958-2,036,214 | + | C2H3g17473 | CX3g028112 | LOC_Os03g04710 | Os03g0140700 | - | Detail |
| C1H3g01474 | 3:2,042,107-2,045,314 | + | C2H3g05277 | CX3g029285 | LOC_Os03g04740 | Os03g0140900 | - | Detail |
| C1H3g10114 | 3:2,046,069-2,047,786 | + | C2H3g19470 | CX3g030261 | LOC_Os03g04750 | Os03g0141000 | - | Detail |
| C1H3g00645 | 3:2,049,566-2,052,981 | + | C2H3g09892 | CX3g026884 | LOC_Os03g04770 | Os03g0141200 | OsBMY4 | Detail |
| C1H3g11848 | 3:2,060,939-2,063,117 | + | C2H3g24267 | CX3g024968 | LOC_Os03g04830 | Os03g0141700 | - | Detail |
| C1H3g03155 | 3:2,066,971-2,069,610 | + | C2H3g24637 | CX3g027335 | LOC_Os03g04840 | Os03g0141800 | - | Detail |
| C1H3g16077 | 3:2,077,782-2,078,738 | + | C2H3g16825 | CX3g027335 | LOC_Os03g04870 | Os03g0142200 | - | Detail |
| C1H3g31558 | 3:2,084,909-2,088,615 | + | C2H3g26010 | CX3g030528 | LOC_Os03g04890 | Os03g0142500 | - | Detail |
| C1H3g10254 | 3:2,089,471-2,090,426 | - | C2H3g05143 | CX3g030147 | LOC_Os03g04900 | Os03g0142600 | Os2R_MYB33 | Detail |
| C1H3g20384 | 3:2,100,222-2,100,713 | + | C2H5g13982 | - | - | - | - | Detail |
| C1H3g19270 | 3:2,111,362-2,118,089 | + | C2H3g20094 | CX3g030977 | LOC_Os03g04920 | Os03g0142800 | - | Detail |
| C1H3g30404 | 3:2,118,729-2,124,248 | - | C2H3g26910 | CX3g029043 | LOC_Os03g04930 | Os03g0142900 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX6g044284 | 6:15,923,913-15,924,206 | + | - | - | - | - | - | Detail |
| CX6g043339 | 6:15,931,431-15,932,057 | - | C1H8g13175 | C2H4g04279 | LOC_Os05g14440 | - | - | Detail |
| CX6g042004 | 6:15,938,596-15,938,862 | + | - | - | - | - | - | Detail |
| CX6g045798 | 6:15,943,367-15,943,840 | - | C1H6g24227 | C2H6g26041 | LOC_Os06g30810 | Os06g0504100 | - | Detail |
| CX6g043950 | 6:15,950,272-15,961,953 | - | C1H6g22494 | C2H6g03410 | LOC_Os06g22550 | Os06g0331300 | - | Detail |
| CX6g043844 | 6:15,980,857-15,981,471 | - | C1H6g24227 | C2H6g26041 | LOC_Os06g30810 | Os06g0504100 | - | Detail |
| CX6g044833 | 6:15,990,073-15,990,462 | - | - | - | - | - | - | Detail |
| CX6g043057 | 6:15,993,382-15,994,248 | - | - | - | - | - | - | Detail |
| CX6g042702 | 6:16,002,725-16,002,904 | + | - | - | - | - | - | Detail |
| CX6g043187 | 6:16,011,160-16,012,335 | - | C1H6g19092 | C2H6g10065 | LOC_Os06g30860 | Os06g0504900 | OsWRKYq6, OsWRKY31 | Detail |
| CX6g044225 | 6:16,031,141-16,031,329 | + | - | - | - | - | - | Detail |
| CX6g044956 | 6:16,043,710-16,075,973 | - | C1H6g28196 | C2H6g01043 | LOC_Os06g30894 | Os06g0505100 | - | Detail |
| CX6g041832 | 6:16,055,600-16,055,800 | + | - | - | - | - | - | Detail |
| CX6g042361 | 6:16,079,766-16,083,930 | + | C1H6g25110 | C2H6g09051 | LOC_Os06g30910 | Os06g0505400 | - | Detail |
| CX6g043862 | 6:16,087,710-16,090,364 | + | C1H6g24962 | C2H6g22604 | - | Os06g0505700 | - | Detail |
| CX6g045779 | 6:16,119,782-16,121,879 | + | C1H6g31826 | C2H6g18363 | LOC_Os06g30930 | Os06g0506000 | - | Detail |
| CX6g041289 | 6:16,124,206-16,126,506 | + | C1H6g00503 | C2H6g23025 | LOC_Os06g30940 | Os06g0506100 | - | Detail |
| CX6g043948 | 6:16,129,390-16,133,007 | - | C1H6g18166 | C2H6g28879 | LOC_Os06g30950 | Os06g0506200 | - | Detail |
| CX6g043814 | 6:16,142,651-16,144,685 | - | C1H6g24322 | C2H6g30190 | LOC_Os06g30970 | Os06g0506600 | - | Detail |
| CX6g045674 | 6:16,162,081-16,162,530 | - | - | - | LOC_Os06g31070 | Os06g0507100 | - | Detail |